Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CKV85_RS01480 Genome accession   NZ_LT906454
Coordinates   302414..303775 (+) Length   453 a.a.
NCBI ID   WP_095121620.1    Uniprot ID   -
Organism   Streptococcus acidominimus strain NCTC11291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 297414..308775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS01455 (SAMEA4504048_00303) - 298180..298968 (-) 789 WP_095121614.1 formate/nitrite transporter family protein -
  CKV85_RS01460 (SAMEA4504048_00304) - 299367..300620 (-) 1254 WP_017770347.1 NAD(P)H-dependent oxidoreductase -
  CKV85_RS01465 (SAMEA4504048_00305) - 300637..301242 (-) 606 WP_095121616.1 NADPH-dependent FMN reductase -
  CKV85_RS01470 (SAMEA4504048_00306) - 301424..301783 (+) 360 WP_017770349.1 YbaN family protein -
  CKV85_RS01475 (SAMEA4504048_00307) - 301949..302398 (+) 450 WP_095121618.1 dUTP diphosphatase -
  CKV85_RS01480 (SAMEA4504048_00308) radA 302414..303775 (+) 1362 WP_095121620.1 DNA repair protein RadA Machinery gene
  CKV85_RS01485 (SAMEA4504048_00309) rlmB 303839..304588 (+) 750 WP_095123686.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CKV85_RS01490 (SAMEA4504048_00310) - 304608..305126 (+) 519 WP_095121622.1 NYN domain-containing protein -
  CKV85_RS01495 (SAMEA4504048_00311) - 305202..306062 (+) 861 WP_095121623.1 DegV family protein -
  CKV85_RS01500 (SAMEA4504048_00313) rplM 306234..306680 (+) 447 WP_017769586.1 50S ribosomal protein L13 -
  CKV85_RS01505 (SAMEA4504048_00314) rpsI 306707..307099 (+) 393 WP_017769585.1 30S ribosomal protein S9 -
  CKV85_RS01510 (SAMEA4504048_00315) - 307227..308381 (-) 1155 WP_095121625.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49573.83 Da        Isoelectric Point: 6.1898

>NTDB_id=1147467 CKV85_RS01480 WP_095121620.1 302414..303775(+) (radA) [Streptococcus acidominimus strain NCTC11291]
MAKKKSSFVCQECGYNSPKYLGRCPNCYAWSSFVEEVDVQEVKNARVSLTGEKTRPTKLKDVDSINYTRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANRGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQNIRAEIE
KIKPDFLIIDSIQSIMSPEVSSVQGSVSQVREVTAELMNLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIR
RVTRIEQRVNEAAKLGFTKIYAPKNSLQGIVIPDNIQVIGVSTVGEVLKKAFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1147467 CKV85_RS01480 WP_095121620.1 302414..303775(+) (radA) [Streptococcus acidominimus strain NCTC11291]
ATCGCTAAGAAAAAATCGAGTTTTGTCTGCCAAGAGTGCGGCTATAACTCACCCAAATACTTAGGACGCTGTCCCAATTG
CTATGCCTGGTCTTCTTTTGTCGAAGAAGTCGACGTGCAAGAGGTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGA
CACGCCCAACCAAACTAAAAGATGTTGATTCTATCAACTATACCCGTACTAAAACTGATATGGATGAATTCAACCGAGTG
CTTGGTGGCGGTGTTGTCCCTGGAAGTCTGGTCTTGATCGGTGGTGATCCTGGTATCGGGAAGTCAACGCTACTCCTCCA
AGTATCAACACAACTTGCCAATCGTGGGACAGTGCTCTATGTTTCTGGGGAAGAATCAGCAGAGCAGATAAAACTCCGCA
GTGAGCGATTAGGTGATATTGATAATGAATTTTACCTTTATGCTGAGACCAACATGCAGAATATCCGGGCTGAGATTGAA
AAAATTAAGCCAGATTTTCTGATTATCGACTCTATCCAAAGCATCATGAGTCCTGAGGTTTCAAGTGTACAAGGTTCGGT
ATCTCAAGTCCGTGAAGTGACTGCAGAGCTGATGAATTTGGCTAAGACCAATAATATTGCTACCTTTATCGTCGGTCATG
TGACCAAGGAGGGTACCTTGGCTGGACCTCGGATGCTGGAGCATATGGTGGATACAGTGCTTTATTTTGAAGGGGAGCGC
CATCATACCTTCCGTATTCTTCGTGCCGTTAAAAATCGCTTTGGCTCTACCAATGAAATTGGTATTTTTGAGATGCAATC
AGGCGGTCTAGTTGAAGTCTTAAACCCCAGTCAGGTCTTTCTGGAAGAGCGTCTAGATGGAGCGACAGGTTCAGCCATTG
TCGTTACCATGGAAGGGACTCGTCCTATTCTGGCAGAGGTGCAGGCGCTTGTGACGCCGACTGTTTTTGGCAATGCAAAA
CGCACGACCACGGGTTTAGACTTTAATCGGGTTAGCTTGATTATGGCAGTTCTTGAAAAACGCTGCGGTTTGCTATTGCA
GAACCAGGATGCCTACCTCAAGTCAGCAGGTGGTGTAAAACTGGATGAGCCAGCTATCGACCTTGCTGTCGCGGTAGCCA
TTGCCTCAAGTTACAAGGAAAAACCAACCAATCCACAAGAATCCTTTATCGGCGAAATTGGCTTAACAGGGGAAATTCGT
CGGGTAACTCGTATCGAACAACGTGTCAACGAAGCTGCTAAGCTAGGTTTTACCAAAATCTACGCCCCTAAAAACTCTCT
TCAAGGTATTGTTATTCCTGATAATATTCAAGTGATCGGTGTCTCAACGGTAGGGGAAGTCTTGAAAAAAGCGTTTGCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.3

100

0.883
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.62

Multiple sequence alignment