Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CKV85_RS00620 Genome accession   NZ_LT906454
Coordinates   115549..116265 (-) Length   238 a.a.
NCBI ID   WP_095123683.1    Uniprot ID   -
Organism   Streptococcus acidominimus strain NCTC11291     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 110549..121265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS00600 (SAMEA4504048_00126) - 111046..113268 (+) 2223 WP_017769595.1 RelA/SpoT family protein -
  CKV85_RS00605 (SAMEA4504048_00127) dtd 113491..113934 (+) 444 WP_095121365.1 D-aminoacyl-tRNA deacylase -
  CKV85_RS00610 (SAMEA4504048_00128) - 113941..114279 (+) 339 WP_017769593.1 hypothetical protein -
  CKV85_RS00615 (SAMEA4504048_00130) - 114417..114926 (+) 510 WP_095121369.1 hypothetical protein -
  CKV85_RS00620 (SAMEA4504048_00131) treR 115549..116265 (-) 717 WP_095123683.1 trehalose operon repressor Regulator
  CKV85_RS00625 (SAMEA4504048_00132) treP 116462..118447 (+) 1986 WP_095121372.1 PTS system trehalose-specific EIIBC component -
  CKV85_RS00630 (SAMEA4504048_00133) treC 118583..120208 (+) 1626 WP_095121375.1 alpha,alpha-phosphotrehalase -
  CKV85_RS00635 (SAMEA4504048_00134) - 120286..121023 (-) 738 WP_095121378.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27441.39 Da        Isoelectric Point: 7.2012

>NTDB_id=1147465 CKV85_RS00620 WP_095123683.1 115549..116265(-) (treR) [Streptococcus acidominimus strain NCTC11291]
MKKYEKIFQKLEAEINQGNYQVNDYLPTEEELAHQFAVSRDTIRKALKLLAQHGLIRKRQGSGSQVVKYERINFPISALT
SYQEIVQALGMVSKTNVIAIDKLIVDAKLSELTGFVPKSHVWRITRQRVVEDVASVLDIDYLDTQFVPDITRPIAETSIY
NYLENQLHLIIDLAEKEITIDQTNAQDRILLDLAGEHHVVSVKSKVFLASGEQFQFTESRHKLDKFRFVDFAKRKHDQ

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1147465 CKV85_RS00620 WP_095123683.1 115549..116265(-) (treR) [Streptococcus acidominimus strain NCTC11291]
ATGAAAAAATACGAGAAAATTTTCCAAAAACTAGAAGCTGAAATCAATCAAGGAAACTATCAGGTTAATGACTATCTCCC
TACCGAAGAAGAATTGGCTCATCAGTTCGCTGTTAGCCGTGACACCATCCGAAAAGCCTTAAAACTCTTAGCGCAACACG
GCCTGATTCGCAAGCGTCAAGGCAGTGGTTCTCAGGTCGTCAAGTACGAGCGTATCAACTTCCCCATTTCAGCCTTAACC
AGTTACCAAGAAATCGTCCAAGCTTTAGGTATGGTCTCAAAGACCAATGTCATCGCCATTGATAAGTTGATCGTTGATGC
TAAACTATCGGAACTGACTGGCTTTGTGCCTAAAAGTCACGTTTGGCGAATCACGCGCCAACGGGTGGTCGAAGATGTCG
CCTCCGTTCTGGACATCGACTATCTGGATACCCAGTTCGTTCCTGATATCACCAGACCTATTGCAGAAACATCTATTTAC
AACTATTTGGAAAATCAGCTGCATCTCATCATTGATTTAGCCGAAAAAGAAATCACCATTGACCAAACCAATGCACAAGA
CCGGATTTTATTAGACTTAGCTGGTGAACACCATGTGGTTTCTGTCAAATCAAAAGTTTTCTTAGCCTCTGGCGAACAAT
TTCAGTTTACAGAGAGCCGACATAAATTAGATAAGTTCCGCTTTGTTGACTTTGCCAAACGCAAACATGACCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

65.823

99.58

0.655

Multiple sequence alignment