Detailed information    

insolico Bioinformatically predicted

Overview


Name   lqsT   Type   Regulator
Locus tag   CKV84_RS13240 Genome accession   NZ_LT906452
Coordinates   2891906..2893168 (+) Length   420 a.a.
NCBI ID   WP_014842537.1    Uniprot ID   A0AAV2UZX6
Organism   Legionella pneumophila strain NCTC11985     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2886906..2898168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS13230 (SAMEA4040028_02625) ceg32 2887794..2890622 (+) 2829 WP_014842535.1 Dot/Icm T4SS effector Ceg32/SidI -
  CKV84_RS13235 (SAMEA4040028_02626) mesI 2890624..2891511 (+) 888 WP_014842536.1 Dot/Icm T4SS metaeffector MesI -
  CKV84_RS13240 (SAMEA4040028_02627) lqsT 2891906..2893168 (+) 1263 WP_014842537.1 sensor histidine kinase Regulator
  CKV84_RS13245 (SAMEA4040028_02628) - 2893216..2893911 (-) 696 WP_014842538.1 iron-containing redox enzyme family protein -
  CKV84_RS13250 (SAMEA4040028_02629) - 2894224..2894517 (-) 294 WP_010946556.1 GIY-YIG nuclease family protein -
  CKV84_RS13255 (SAMEA4040028_02631) - 2894543..2895628 (-) 1086 Protein_2552 IS4 family transposase -
  CKV84_RS13260 (SAMEA4040028_02632) - 2895736..2896680 (-) 945 WP_014841754.1 IS110 family transposase -

Sequence


Protein


Download         Length: 420 a.a.        Molecular weight: 48643.04 Da        Isoelectric Point: 7.9744

>NTDB_id=1147451 CKV84_RS13240 WP_014842537.1 2891906..2893168(+) (lqsT) [Legionella pneumophila strain NCTC11985]
MQRLKNIFTAIYQYLLKETEDASHQITLFGIVMMINYPLFGVFWKLEHFQLTEEFILRITAALLCACLAFNQFWPRQLLK
FLPVFWYIVLLFCLPYFFAYLTLINNGSTLWLMNCVSAIFFLLLVSSVLGALILLVSGVGLAFFHFYILSNNQFVYIPGT
ISLFSLIVTFIAAIIIGALFARDREITYAGRLSGMRMLAGSIAHDLRTPLASIYLQAELQELIVERLNNPEVQKDLKENL
SKITRGIEMSNQLIRMQLNNIQRDKLDTSTFSIYSIKKLLKASLEEYPFKENQKSLIHLNDKNDFSIWIDEVGFKNMMWN
LLKNSLEYIEETHKGEISIWLEQGWEKENFNYLHIKDTAKGLNHKEYEKIFDFFYSGRKEGTGLGLAYCKLLMQAAGGDI
SCKGKKNEFAHFTLKFPKID

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1147451 CKV84_RS13240 WP_014842537.1 2891906..2893168(+) (lqsT) [Legionella pneumophila strain NCTC11985]
ATGCAAAGGTTAAAAAATATATTTACTGCAATTTACCAATATTTATTAAAAGAAACTGAAGATGCAAGCCACCAAATCAC
TTTATTTGGCATCGTCATGATGATTAATTACCCTCTTTTCGGAGTTTTCTGGAAACTGGAGCATTTTCAACTGACAGAAG
AATTTATTTTACGCATCACTGCAGCCCTCCTCTGTGCCTGTTTAGCATTTAATCAATTTTGGCCAAGACAATTATTAAAA
TTTCTACCTGTTTTTTGGTATATAGTTCTTCTCTTTTGTTTACCTTACTTTTTTGCTTATTTGACTCTCATAAACAATGG
CTCGACTCTTTGGCTAATGAATTGCGTATCCGCTATCTTTTTTCTTTTATTAGTTTCCAGTGTATTGGGGGCTCTCATAT
TACTTGTATCAGGTGTTGGACTTGCTTTTTTTCATTTTTATATTTTATCAAATAATCAGTTTGTCTATATCCCAGGAACT
ATATCACTTTTTAGTTTAATTGTTACGTTTATTGCAGCAATAATCATTGGTGCTTTGTTTGCACGAGATAGAGAAATTAC
CTATGCCGGACGTTTATCGGGTATGCGCATGCTGGCTGGAAGTATCGCTCATGATTTAAGAACGCCGCTTGCCAGTATTT
ATTTACAAGCCGAATTACAGGAATTGATTGTCGAAAGATTAAATAATCCAGAAGTTCAAAAGGACCTGAAGGAAAATTTA
AGCAAAATTACTCGCGGCATAGAAATGAGTAATCAATTAATTCGTATGCAATTAAATAATATTCAACGAGACAAATTAGA
TACCAGTACATTTTCGATTTATTCCATCAAAAAATTGCTCAAGGCGTCTTTAGAAGAATACCCTTTCAAAGAAAATCAAA
AATCATTGATTCATTTAAATGATAAAAATGATTTTTCCATATGGATTGATGAAGTGGGTTTTAAAAATATGATGTGGAAT
TTGCTAAAAAATAGTCTGGAATATATTGAGGAAACCCATAAAGGCGAAATCTCTATCTGGCTAGAACAAGGATGGGAGAA
AGAGAATTTTAATTACCTCCATATAAAAGATACAGCTAAAGGTTTAAATCATAAAGAATATGAAAAAATATTTGATTTCT
TCTATTCTGGCAGAAAAGAAGGAACTGGTTTAGGCTTGGCCTATTGTAAACTTCTGATGCAAGCAGCAGGTGGTGATATT
TCCTGTAAAGGGAAAAAAAATGAATTCGCTCATTTCACTTTAAAATTCCCCAAAATTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

99.762

100

0.998


Multiple sequence alignment