Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CKV84_RS03435 Genome accession   NZ_LT906452
Coordinates   694249..696456 (-) Length   735 a.a.
NCBI ID   WP_027220487.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11985     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 689249..701456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS03415 (SAMEA4040028_00667) - 689755..691683 (-) 1929 WP_027220484.1 hypothetical protein -
  CKV84_RS03420 (SAMEA4040028_00668) - 691808..692200 (-) 393 WP_011214843.1 hypothetical protein -
  CKV84_RS03425 (SAMEA4040028_00669) - 692337..692714 (+) 378 WP_027220485.1 hypothetical protein -
  CKV84_RS03430 (SAMEA4040028_00670) - 692916..694223 (+) 1308 WP_027220486.1 tetratricopeptide repeat protein -
  CKV84_RS03435 (SAMEA4040028_00671) comEC 694249..696456 (-) 2208 WP_027220487.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CKV84_RS03440 (SAMEA4040028_00672) pilE 696534..696983 (-) 450 WP_027220488.1 type IV pilin protein Machinery gene
  CKV84_RS03445 (SAMEA4040028_00673) - 696995..700504 (-) 3510 WP_027220489.1 pilus assembly protein -
  CKV84_RS03450 (SAMEA4040028_00674) - 700517..701029 (-) 513 WP_027220490.1 pilus assembly protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 83316.83 Da        Isoelectric Point: 9.6572

>NTDB_id=1147420 CKV84_RS03435 WP_027220487.1 694249..696456(-) (comEC) [Legionella pneumophila strain NCTC11985]
MEIFCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVLFFIAGYGFALIHQWIVSPKGMPETQVITQAQLEGTIASIPMQ
RPNKTQFHFAIEKINNNPAQGLIQLNWYNKPPVLRAGQRWQFSVKLKKPRNFHNPGGFNYVSYLGARHIHWTGYIRYGNN
KLISNQPPSFSWLTLREKIGDALTKMAPDTETAGIIEALTLNVTHHISSDHWNLFRRTGTIHLFGISGEHIALVSGIFFI
VMRWIWSINYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGKQRFTPWQIWRYALFLVLCIE
PHAVFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL
MTMITSPFHWSWILMKPLAWLVALLLQGLTYVEQIAGINITWSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIILPL
FPPRTAIYPGEALINILDVGQGLAVAIQTQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSIGIKTIDKIVISHPDKDHKGG
LNSLEKEMQVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSFRFLPIRESFNKKNNNSCILQVSNSAGRVLLTGDIEKAAEE
YLVRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMAEIKL
PASGKINKPTCMQAE

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=1147420 CKV84_RS03435 WP_027220487.1 694249..696456(-) (comEC) [Legionella pneumophila strain NCTC11985]
ATGGAAATTTTTTGCTTTTTAATAGGCGTACTTTATGCCTATACCTATAATATTTATCTAACTATTGCGATTCCTTTACT
CTTTTATATCACACCAAGATATCCCATTGTCCTGTTCTTCATCGCCGGATATGGCTTTGCCCTGATTCATCAGTGGATTG
TATCTCCCAAGGGCATGCCTGAGACGCAAGTAATCACTCAAGCCCAATTGGAAGGAACTATTGCTTCCATCCCCATGCAA
CGTCCTAACAAAACCCAATTCCATTTTGCAATTGAAAAAATTAATAATAACCCTGCTCAAGGCTTGATCCAATTAAACTG
GTATAACAAACCACCTGTCTTACGAGCCGGTCAGCGATGGCAATTTTCAGTGAAACTAAAAAAACCTCGTAACTTCCACA
ACCCGGGAGGTTTTAATTATGTAAGTTACCTGGGGGCCCGTCATATCCATTGGACTGGCTATATTCGTTATGGGAATAAT
AAGCTAATTAGCAATCAACCCCCTTCTTTCAGTTGGTTAACACTACGTGAAAAAATTGGGGATGCTTTGACAAAAATGGC
ACCGGATACAGAAACGGCAGGCATCATTGAAGCATTAACGTTAAATGTTACTCACCATATCAGTTCGGATCATTGGAATT
TGTTCCGAAGAACAGGAACGATACATTTATTCGGAATTTCAGGAGAGCACATCGCTCTGGTCTCCGGCATTTTCTTTATC
GTGATGAGATGGATTTGGTCAATAAATTATCGATGCTGTTTGTTCTTACCGGCCAATACCATAGCGAGTATCGGTGGGCT
ACTGGCCGCCTTGCCCTATGCTTTTTTAGCCGGGTTTGAGCCTCCTGTGCAACGTGCTTTAATTGGTTGTGTACTTTACA
CAATATACGCCATAGGAAAACAACGTTTTACACCATGGCAAATATGGAGATATGCCTTATTTTTAGTCTTGTGTATTGAG
CCCCATGCCGTATTCCTGCAAGGTTTTTACTTTTCATTTCTTGCCGTGGCCTGTCTTCTATTGACTCATCAACGCTGGCC
ACTGAAAAATTATAAAAAAACACTGGCATTACAATTAAGCTGCCTCATTGGATTAATGCCCTTGACTCTCCATTGGTATT
CCTATGGTTCTATCAATGGATTTCTTGCCAATTTATTCGCCATACCTTTAGTCAGTTTTCTGATAGTGCCCTTGGCTTTA
ATGACTATGATAACGAGTCCATTTCATTGGTCCTGGATATTGATGAAACCATTGGCGTGGCTTGTTGCCCTGTTACTGCA
AGGACTAACGTATGTTGAGCAAATAGCCGGGATCAATATCACCTGGTCCATCACCTCGGTAACAATGATGCTCGCTATGA
CAGCAGGTCTGTTTTTAAGGGTATTATTACCTGTCAAGCCATTCAAACACTTGGCTATCCTTTGGATTATCCTTCCCTTA
TTTCCGCCTCGTACTGCAATTTATCCAGGTGAAGCATTAATTAATATTTTGGATGTTGGGCAAGGACTTGCCGTTGCGAT
ACAAACGCAACATCATGTTTTACTCTACGATACGGGAGATTCCTATTTTCAGGGAAGTGATTTAGGGCAAATGGCGATAA
TCCCCTTTTTCAGGTCAATTGGAATAAAAACAATTGACAAAATAGTAATAAGCCATCCCGATAAAGATCATAAGGGCGGA
TTAAATTCCCTTGAAAAAGAGATGCAAGTCAATCAACTAATAGTGAATGATCCCTATTTTTATAAACGTGGAAGTAATTG
TCATTCATACCCGCAATGGCAATGGGATGGGGTGAGTTTTCGTTTTTTACCCATCAGGGAATCTTTCAATAAAAAAAATA
ACAATTCTTGTATCTTGCAGGTAAGTAATTCGGCTGGCAGGGTTTTATTAACGGGAGATATTGAAAAAGCAGCGGAGGAG
TACCTGGTAAGAAACTACGGCAGTCAGCTGGCATCCGAAATTTTAGTTGTGCCTCATCATGGGAGCAAAACGTCTTCATC
CTATCGATTTTTGCTGGAAGTAAACCCGCTTTATGCCATTGCATCTTTAGGATTTGATAATCGTTTCAAATTTCCACATT
CTAAAACTTTGCAAAGCATGAAAACATTAGGTATCACTTTTTTTAGAACAGACGAATGCGGAATGGCAGAAATCAAACTA
CCTGCGTCAGGTAAAATTAACAAACCAACCTGTATGCAGGCTGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-158)

Competence protein (Competence)

(199-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-578)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

98.501

99.864

0.984
  comEC Legionella pneumophila strain ERS1305867

96.327

100

0.963

Multiple sequence alignment