Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   CKV79_RS00725 Genome accession   NZ_LT906451
Coordinates   161252..161908 (+) Length   218 a.a.
NCBI ID   WP_028372308.1    Uniprot ID   A0A0W0VM21
Organism   Legionella lansingensis strain NCTC12830     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 156252..166908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV79_RS00695 (SAMEA44548918_00141) msrA 156403..156981 (-) 579 WP_028372314.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CKV79_RS00700 (SAMEA44548918_00142) - 156994..157605 (-) 612 WP_028372313.1 CDP-alcohol phosphatidyltransferase family protein -
  CKV79_RS00705 (SAMEA44548918_00143) - 157704..158948 (-) 1245 WP_028372312.1 serine/threonine-protein kinase -
  CKV79_RS00710 (SAMEA44548918_00144) dapB 159043..159774 (-) 732 WP_028372311.1 4-hydroxy-tetrahydrodipicolinate reductase -
  CKV79_RS00715 (SAMEA44548918_00145) - 159801..160004 (-) 204 WP_028372310.1 hypothetical protein -
  CKV79_RS00720 (SAMEA44548918_00146) - 160229..160948 (-) 720 WP_028372309.1 hypothetical protein -
  CKV79_RS00725 (SAMEA44548918_00147) rocC 161252..161908 (+) 657 WP_028372308.1 ProQ/FinO family protein Regulator
  CKV79_RS00730 (SAMEA44548918_00148) - 161982..162758 (-) 777 WP_028372307.1 2OG-Fe(II) oxygenase -
  CKV79_RS00735 (SAMEA44548918_00149) pyk 162837..164264 (-) 1428 WP_035914867.1 pyruvate kinase -
  CKV79_RS00740 (SAMEA44548918_00150) - 164245..165435 (-) 1191 WP_028372305.1 phosphoglycerate kinase -
  CKV79_RS00745 (SAMEA44548918_00151) gap 165445..166437 (-) 993 WP_028372304.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24633.44 Da        Isoelectric Point: 11.0090

>NTDB_id=1147391 CKV79_RS00725 WP_028372308.1 161252..161908(+) (rocC) [Legionella lansingensis strain NCTC12830]
MRRQELHPRTAILNKAQKNKSKKARNEALLWLTATFPQAFDNTLRIRPLKMGIMNDILAFADKAAEFGISKSKLREAVVL
FTRRIDYLTCLKAREMRIDLQGNPVSLVTEDEAERAAIKIKKRVEKSTRNMRKATPGKTTQMQFSSKPSSQQSDDSGSLE
PVSYFPERAPAFSVQNSPTPARPAVVVKHKISRQFDPDAVARLKEKLGLSRKTHETAD

Nucleotide


Download         Length: 657 bp        

>NTDB_id=1147391 CKV79_RS00725 WP_028372308.1 161252..161908(+) (rocC) [Legionella lansingensis strain NCTC12830]
ATGAGAAGGCAAGAACTTCATCCCCGCACCGCAATACTTAACAAAGCACAAAAAAATAAATCCAAAAAAGCTCGTAACGA
GGCTTTATTGTGGCTCACAGCTACTTTTCCGCAAGCGTTTGACAACACGTTAAGGATTCGTCCGTTAAAAATGGGCATCA
TGAATGATATCTTAGCCTTTGCGGATAAGGCAGCCGAGTTTGGTATATCAAAAAGTAAACTGCGGGAAGCCGTTGTTTTA
TTTACGCGACGGATTGATTATTTAACTTGTCTTAAAGCACGTGAAATGCGAATTGATTTACAAGGCAATCCTGTAAGTCT
GGTAACTGAGGATGAAGCAGAAAGAGCGGCTATTAAAATCAAAAAACGTGTGGAAAAAAGTACTCGTAACATGCGCAAAG
CCACTCCAGGAAAAACCACTCAAATGCAATTTAGCTCAAAACCATCTTCTCAACAATCCGACGACTCTGGTTCGTTAGAA
CCAGTATCTTATTTCCCGGAGCGTGCACCAGCTTTCAGTGTGCAAAATTCGCCAACTCCTGCCCGTCCCGCTGTTGTTGT
TAAACATAAGATCTCTCGGCAATTTGATCCGGATGCTGTTGCGCGCTTAAAAGAAAAATTAGGTTTATCGCGCAAGACAC
ATGAAACGGCAGATTAG

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(25-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0VM21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

59.821

100

0.615

Multiple sequence alignment