Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A407_RS07100 Genome accession   NZ_CP006874
Coordinates   1404054..1405745 (+) Length   563 a.a.
NCBI ID   WP_003738883.1    Uniprot ID   A0A0B8RFK2
Organism   Listeria monocytogenes serotype 4b str. 81-0861     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1399054..1410745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A407_RS07070 (A407_1424) - 1399064..1399291 (+) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -
  A407_RS07075 (A407_1425) - 1399294..1400175 (+) 882 WP_003726251.1 polyprenyl synthetase family protein -
  A407_RS07080 (A407_1426) - 1400374..1400574 (+) 201 WP_003719639.1 cold-shock protein -
  A407_RS07085 (A407_1427) dxs 1400741..1402570 (+) 1830 WP_010958892.1 1-deoxy-D-xylulose-5-phosphate synthase -
  A407_RS07090 (A407_1428) - 1402567..1403391 (+) 825 WP_003726253.1 TlyA family RNA methyltransferase -
  A407_RS07095 (A407_1429) ahrC 1403582..1404031 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  A407_RS07100 (A407_1430) recN 1404054..1405745 (+) 1692 WP_003738883.1 DNA repair protein RecN Machinery gene
  A407_RS07105 (A407_1431) - 1405875..1406741 (+) 867 WP_009918029.1 phosphate acyltransferase -
  A407_RS07110 (A407_1432) buk 1406878..1407945 (+) 1068 WP_003727472.1 butyrate kinase -
  A407_RS07115 (A407_1433) lpdA 1407960..1409387 (+) 1428 WP_003726257.1 dihydrolipoyl dehydrogenase -
  A407_RS07120 (A407_1434) - 1409412..1410407 (+) 996 WP_010958893.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63518.26 Da        Isoelectric Point: 5.1296

>NTDB_id=114738 A407_RS07100 WP_003738883.1 1404054..1405745(+) (recN) [Listeria monocytogenes serotype 4b str. 81-0861]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=114738 A407_RS07100 WP_003738883.1 1404054..1405745(+) (recN) [Listeria monocytogenes serotype 4b str. 81-0861]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGGTCAGCTGATT
TTATCCGTCATGGAGAAGAACGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCG
TTAATTGAAAATGGGATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGGAAAAATAGTTG
CCGAATTAATGGCAAACTTGTAACTACCGTTCTCTTGCGTCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTGTCATTACTTGATCGTTTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATCGAGAAAGAGTGGCAAAATTGGACGAAAAATGAGCGGGAATT
AGCGCAACGTCTGGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAATTTGTTGGAGAAGCAATGCGTCAAATGGAGGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGTGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGCATGAGCCAAATTAGGCAATCACTAGATCAGCTCG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGTAAAACA
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTTAAAGCAGAACTAACAAAACAAGCAAATACACTAACGGAAATCCGTAAAAAAGCGG
CTGTTACATTAGAAAAACAAATCAAACAAGAATTAAATCACTTATATATGGAGAAAGCCATTTTTAGTGTACGCTTCGAA
GCAAACAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTCGTTTTCTATATGTCAACAAACCCGGGTGAACCTTTAAA
ACCATTAGCAAAAATCGCTTCTGGTGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGCTCGCAAGTACTATGCATTAGTCACTTACCTCAAGTTGCAGCAATGGCGAACCATCACTACTACAT
TACGAAAAAAGTCCAAAACAAACGGACAACAACTTCCGTTACAGTGCTTAAAGGGGAAGAGAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTCACCGAATTAACCAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B8RFK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.257

100

0.535

Multiple sequence alignment