Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CKV71_RS11420 Genome accession   NZ_LT906447
Coordinates   2428537..2429907 (-) Length   456 a.a.
NCBI ID   WP_095106893.1    Uniprot ID   A0A239UGN3
Organism   Staphylococcus piscifermentans strain NCTC13836     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2423537..2434907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV71_RS11405 (SAMEA4384060_02337) cysE 2424773..2425402 (-) 630 WP_186824455.1 serine O-acetyltransferase -
  CKV71_RS11410 (SAMEA4384060_02339) gltX 2425707..2427161 (-) 1455 WP_095106889.1 glutamate--tRNA ligase -
  CKV71_RS11415 (SAMEA4384060_02340) - 2427451..2428509 (-) 1059 WP_095106891.1 PIN/TRAM domain-containing protein -
  CKV71_RS11420 (SAMEA4384060_02341) radA 2428537..2429907 (-) 1371 WP_095106893.1 DNA repair protein RadA Machinery gene
  CKV71_RS11425 (SAMEA4384060_02342) - 2430084..2432549 (-) 2466 WP_095106895.1 ATP-dependent Clp protease ATP-binding subunit -
  CKV71_RS11430 (SAMEA4384060_02343) - 2432561..2433565 (-) 1005 WP_095106897.1 protein arginine kinase -
  CKV71_RS11435 (SAMEA4384060_02344) - 2433570..2433956 (-) 387 Protein_2245 UvrB/UvrC motif-containing protein -
  CKV71_RS11440 (SAMEA4384060_02345) - 2434116..2434577 (-) 462 WP_095106901.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50296.94 Da        Isoelectric Point: 7.6990

>NTDB_id=1147348 CKV71_RS11420 WP_095106893.1 2428537..2429907(-) (radA) [Staphylococcus piscifermentans strain NCTC13836]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEVVEKKEAPSGRGMRTREQTAKVTKLNQVQNETTPRIQTSSPEFDR
VLGGGVVQGSLVLIGGDPGIGKSTLLLQICSALSQKKKVLYITGEESLNQTKLRADRLEEDSSNLNVFAETDLEVIKEAV
KQTQPDLVVVDSIQTIYHPDINSAPGSVSQVRESTQILMGIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKHSGLKGVKNPSEMFLEERSTNVAGSTIVPTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLNLLMAVLEKKESYLLQQQDAYIKVAGGVRLTEPAVDLAIIASIASSFKDQPVNGMDCYVGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWEFPEGIQVIGVTSVHEALDFALMKR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1147348 CKV71_RS11420 WP_095106893.1 2428537..2429907(-) (radA) [Staphylococcus piscifermentans strain NCTC13836]
TTGGCAAAGAAAAAAGTCATCTTTGAGTGTATGGCATGTGGGTACCAATCTCCGAAATGGATGGGTAAATGTCCGAATTG
TGGAGCATGGAACCAAATGGAAGAAGTCGTTGAAAAGAAAGAAGCACCAAGCGGCAGAGGCATGCGTACACGTGAGCAGA
CAGCGAAAGTAACGAAGCTGAATCAAGTACAAAATGAGACGACTCCGCGTATTCAAACGAGTTCTCCTGAATTCGACAGA
GTCTTAGGAGGCGGCGTTGTACAAGGGTCACTGGTCTTAATCGGCGGAGATCCAGGAATTGGTAAATCTACGTTGCTACT
GCAAATCTGTTCAGCCTTATCACAAAAGAAAAAAGTTTTATATATAACTGGTGAAGAATCACTTAACCAAACCAAGTTGC
GTGCAGATCGTCTGGAAGAAGATTCCAGCAATTTGAATGTATTTGCAGAAACAGATTTAGAAGTGATTAAAGAAGCGGTC
AAACAGACACAACCTGATTTAGTGGTGGTAGATTCCATTCAAACAATTTATCATCCGGATATTAATTCTGCGCCAGGTTC
GGTCTCGCAAGTAAGAGAAAGTACACAAATTTTAATGGGTATTGCAAAGCAGATGAATATTGCAACCTTTATAGTAGGGC
ATGTAACGAAAGAAGGCCAAATTGCAGGACCAAGATTACTAGAACACATGGTGGATACAGTATTGTATTTTGAAGGTGAT
GAACACCATGCCTACCGTATTCTGCGCGCAGTTAAAAACCGCTTCGGCTCTACTAATGAAATGGGTATTTTTGAAATGAA
ACATAGCGGATTGAAGGGCGTGAAAAATCCTTCTGAAATGTTCTTAGAAGAACGTTCTACCAATGTGGCAGGTTCGACTA
TCGTACCAACCATGGAAGGTACCAGACCGCTATTGATTGAAGTACAAGCCTTAGTTACACCGACAACTTTCAATAATCCT
AGACGTATGGCTACAGGTATTGACCATAACCGTTTGAATTTATTGATGGCTGTACTTGAGAAGAAAGAAAGCTATTTATT
GCAACAGCAAGATGCTTATATCAAAGTAGCAGGCGGAGTCAGATTAACTGAACCAGCTGTCGACCTAGCAATCATTGCTT
CGATTGCTTCTAGTTTCAAAGATCAGCCGGTCAACGGCATGGACTGCTATGTGGGTGAAGTAGGATTGACTGGTGAAGTA
CGTCGTGTTTCACGTATTGAGCAGCGCGTACAAGAAGCAGCGAAACTTGGATTTAAACGTGTGATTATCCCTAAAACAAA
TATCGGCGGTTGGGAATTCCCTGAAGGAATCCAAGTTATCGGCGTTACAAGTGTTCATGAAGCGCTTGATTTCGCTTTGA
TGAAACGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239UGN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.447

100

0.664
  radA Streptococcus pneumoniae Rx1

60.802

98.465

0.599
  radA Streptococcus pneumoniae D39

60.802

98.465

0.599
  radA Streptococcus pneumoniae R6

60.802

98.465

0.599
  radA Streptococcus pneumoniae TIGR4

60.802

98.465

0.599
  radA Streptococcus mitis NCTC 12261

60.802

98.465

0.599
  radA Streptococcus mitis SK321

60.802

98.465

0.599

Multiple sequence alignment