Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   CKV71_RS04815 Genome accession   NZ_LT906447
Coordinates   1074539..1075255 (-) Length   238 a.a.
NCBI ID   WP_095104389.1    Uniprot ID   A0A239TWQ9
Organism   Staphylococcus piscifermentans strain NCTC13836     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1069539..1080255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV71_RS04795 (SAMEA4384060_00993) - 1070641..1071285 (+) 645 WP_095104381.1 redox-sensing transcriptional repressor Rex -
  CKV71_RS04800 (SAMEA4384060_00994) - 1071448..1071672 (-) 225 WP_095104383.1 sulfurtransferase TusA family protein -
  CKV71_RS04805 (SAMEA4384060_00995) - 1071699..1072784 (-) 1086 WP_095104385.1 YeeE/YedE family protein -
  CKV71_RS04810 (SAMEA4384060_00996) - 1072996..1074459 (+) 1464 WP_095104387.1 GH32 C-terminal domain-containing protein -
  CKV71_RS04815 (SAMEA4384060_00997) agrA 1074539..1075255 (-) 717 WP_095104389.1 quorum-sensing response regulator AgrA Regulator
  CKV71_RS12780 (SAMEA4384060_00998) agrC 1075260..1076555 (-) 1296 WP_095104391.1 quorum-sensing sensor histidine kinase AgrC -
  CKV71_RS04825 (SAMEA4384060_00999) agrD 1076587..1076724 (-) 138 WP_095104393.1 cyclic lactone autoinducer peptide AgrD -
  CKV71_RS04830 (SAMEA4384060_01000) - 1076733..1077305 (-) 573 WP_095104395.1 accessory gene regulator AgrB -
  CKV71_RS12785 - 1077810..1077890 (+) 81 WP_047132799.1 delta-lysin family phenol-soluble modulin -
  CKV71_RS04840 (SAMEA4384060_01002) - 1078199..1078999 (-) 801 WP_095104397.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27938.78 Da        Isoelectric Point: 4.7122

>NTDB_id=1147328 CKV71_RS04815 WP_095104389.1 1074539..1075255(-) (agrA) [Staphylococcus piscifermentans strain NCTC13836]
MKIIICEDDLQQRSHIEEIINNYIMIEEKPLEIVLSTADPYEVLEYAKETNEICCYFLDIQLDADINGIKLGSELRQYDT
MGSIIFITSHSELTYLTFVYKVAAMDFIFKDDPSEMKSRIIDCLETSLTRLQLLSKENNVETIELKRGSNSVYVNYDDVM
FFESSSKSHRLIAHLDNRQIEFYGSLKELSNIDDRFFRCHNSFVINRNNIEEVISKEREIHFKNGEHCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1147328 CKV71_RS04815 WP_095104389.1 1074539..1075255(-) (agrA) [Staphylococcus piscifermentans strain NCTC13836]
ATGAAAATTATTATCTGTGAAGACGATCTGCAACAACGTTCTCATATCGAAGAGATTATCAATAATTATATTATGATTGA
AGAAAAACCATTAGAAATTGTTCTATCAACTGCAGATCCTTATGAAGTGCTGGAATATGCAAAAGAAACAAACGAAATTT
GTTGTTATTTCTTGGATATCCAATTAGATGCAGATATTAATGGTATTAAACTCGGTAGTGAGTTGAGACAATATGATACG
ATGGGCAGCATCATATTTATTACAAGTCACAGCGAACTCACTTATCTTACTTTTGTTTATAAAGTGGCTGCCATGGACTT
TATTTTCAAAGATGATCCAAGTGAAATGAAATCACGTATTATCGATTGTCTTGAGACTTCTTTGACACGTTTGCAACTTC
TCTCCAAAGAAAACAACGTAGAGACTATTGAATTAAAGAGAGGCAGCAATTCAGTATATGTGAATTATGATGATGTCATG
TTCTTTGAATCTTCTTCTAAATCGCACCGGTTAATTGCACATTTGGATAATCGGCAAATTGAATTCTATGGCAGTTTAAA
GGAACTGAGCAACATAGATGACCGCTTCTTCCGTTGCCATAACAGCTTCGTGATTAACCGCAACAATATTGAAGAAGTGA
TTTCTAAAGAACGCGAAATCCACTTCAAAAATGGTGAGCATTGTTATGTATCAGTACGTAACCTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239TWQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

77.731

100

0.777

Multiple sequence alignment