Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CKV76_RS11480 Genome accession   NZ_LT906440
Coordinates   1940378..1943491 (+) Length   1037 a.a.
NCBI ID   WP_164996024.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC13798     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1935378..1948491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV76_RS11450 (SAMEA4076741_02017) - 1936075..1936524 (-) 450 WP_003692085.1 CopD family copper resistance protein -
  CKV76_RS11455 (SAMEA4076741_02018) waaA 1936565..1937836 (-) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CKV76_RS11460 (SAMEA4076741_02019) gnd 1937899..1939347 (-) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  CKV76_RS11465 - 1939427..1939690 (-) 264 WP_017147189.1 hypothetical protein -
  CKV76_RS11480 (SAMEA4076741_02020) pilC 1940378..1943491 (+) 3114 WP_164996024.1 PilC family type IV pilus tip adhesin Machinery gene
  CKV76_RS11495 (SAMEA4076741_02021) - 1944143..1944427 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  CKV76_RS11505 (SAMEA4076741_02022) yccS 1944910..1947060 (-) 2151 WP_003697785.1 YccS family putative transporter -
  CKV76_RS11510 (SAMEA4076741_02023) - 1947177..1948402 (-) 1226 Protein_1983 PilT/PilU family type 4a pilus ATPase -

Sequence

Protein


Download         Length: 1037 a.a.        Molecular weight: 113105.48 Da        Isoelectric Point: 9.8679

>NTDB_id=1147209 CKV76_RS11480 WP_164996024.1 1940378..1943491(+) (pilC) [Neisseria gonorrhoeae strain NCTC13798]
MNKTLKRQVFRHTALYAAILMFSHTGGGGAMAQTHQYAIIMNGRNQPEVKQNVPSSIKDKDRRREYTYYTHRTGGGSVSF
NNNDTLVSQQSGTAVFGTATYLPPYGKVSGFDADALKERNNAVDWIRTTRIALAGYSYIDVICRSYTGCPKLVYKTRFTF
GQQGLKRKAGSKLDIYEDKSRENSPIYKLSDYPWLGVSFNLGSENTVQNSKLFNKLISSFREGNNNQTIVSTTEGNPISL
GDRQREHTAVAYYLNAKLHLLDKKGIEDIAQGKIVDLGILKPHVETTGRSLLDFWARWDIKDTGQIPVKLGLPQVKAGRC
TNKPNPNNNTKAPSPALTAPALWFGPGQDGKAEMYSASVSTYPDSSSSRIFLQELKTQTEPGKPGRYSLKSLNDGEIKSR
QPSFNGRQTIIRLDDGVHLIKLNGSKDEVAAFVNLNGNNTGKNDTFGIVKEANVNLDADEWKKVLLPWTVRGPDNDNKFK
SINQKPEKYSQRYRIRDNNGNRDLGDIVNSPIVAVGGYLATAANDGMVHIFKKNGGSDERSYNLKLSYIPGTMPRKDIQS
QESTLAKELRAFAEKGYVGDRYGVDGGFVLRQVELSGQKHVFMFGAMGFGGRGAYALDLSKINGNYPAAAPLFDVKNGDK
NGKNGKNRVEVELGYTVGTPQIGKIRNGKYAAFLASGYAAKQIASQENKTALYVYDLKDTLGTPIAKIEVKGGKGGLSSP
TLVDKDLDGIVDIAYAGDRGGNMYRFDLSNSDPSKWSVSTIFEGGKPITSAPAVSRLADKRVVIFGTGSDLTEDDVLDTK
EQYIYGIFDDDKGTGTVKVTVQNGTGGGLLEQTLTKENNTLFLSNNKASGGSNGKGWVVRLREGERVTVKPTVVLRTAFV
TIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPEANTAVAQYSGHKKTAGGKSVPIGCMWKNSKTVCPNGYVYDK
PVNVRYLDETETDGFSTTADGDAGGSGIDPAGRRPGKNNRCFSKKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3114 bp        

>NTDB_id=1147209 CKV76_RS11480 WP_164996024.1 1940378..1943491(+) (pilC) [Neisseria gonorrhoeae strain NCTC13798]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGATGGCGCAAACCCATCAATACGCTATTATCATGAACGGGCGAAACCAGCCCGAGGTAAAGCAGAATGTGC
CATCTTCAATAAAGGACAAAGACAGGAGGCGCGAATATACTTATTATACGCACAGAACAGGAGGAGGCTCTGTCTCATTC
AACAATAACGATACCCTTGTTTCCCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAA
GGTTTCCGGTTTTGATGCCGACGCTCTGAAAGAGCGCAACAATGCCGTTGATTGGATTCGTACCACCCGCATCGCGCTGG
CAGGCTACTCCTACATCGACGTCATATGCAGAAGCTACACAGGCTGTCCCAAACTTGTCTATAAAACCCGATTTACCTTC
GGTCAACAAGGGTTGAAAAGAAAGGCAGGCAGCAAGCTGGATATATACGAAGACAAAAGCCGCGAAAATTCGCCCATTTA
CAAATTGTCGGATTATCCTTGGTTGGGCGTATCTTTCAATTTGGGCAGCGAGAATACCGTCCAAAATAGCAAATTATTCA
ACAAATTGATATCTTCTTTTAGAGAAGGCAATAATAATCAAACCATCGTCTCTACGACAGAAGGCAACCCTATTTCCCTT
GGCGACCGGCAGCGCGAACATACCGCCGTGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGACAAAAAAGGGATTGA
AGATATCGCCCAAGGCAAAATAGTGGATTTGGGTATCTTGAAACCGCACGTCGAGACGACAGGACGAAGCTTGCTAGATT
TTTGGGCTAGGTGGGACATTAAAGATACCGGGCAGATTCCGGTCAAGCTCGGCCTGCCGCAAGTCAAAGCAGGCCGCTGC
ACCAACAAACCGAACCCCAATAATAATACCAAAGCCCCTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGACCCGG
GCAAGATGGTAAGGCGGAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACAGTTCGAGCAGCCGCATCTTCCTCCAAG
AGCTGAAAACTCAAACCGAACCCGGCAAACCCGGCCGCTATTCCCTCAAATCTTTGAATGATGGTGAGATTAAAAGTCGA
CAGCCGAGTTTCAACGGGCGGCAAACAATCATCCGATTGGATGACGGCGTACATTTGATCAAACTGAATGGAAGCAAGGA
TGAGGTCGCCGCTTTTGTCAATTTAAATGGAAACAACACCGGCAAAAACGACACTTTCGGCATTGTTAAGGAAGCGAACG
TCAATCTTGACGCCGACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCCGATAATGACAATAAATTTAAA
TCAATTAACCAAAAACCAGAAAAATACAGCCAAAGATACCGCATCCGCGACAACAACGGCAATCGCGATTTGGGCGACAT
CGTCAACAGCCCGATTGTCGCGGTCGGCGGGTATTTGGCAACCGCCGCGAACGACGGGATGGTGCATATCTTCAAAAAAA
ACGGCGGCAGTGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCAAGGATATTCAAAGC
CAAGAATCCACCCTTGCCAAAGAGCTGCGCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGG
CTTTGTCTTGCGCCAAGTCGAACTGAGCGGGCAAAAACACGTGTTTATGTTCGGCGCGATGGGTTTTGGCGGCAGGGGCG
CGTATGCCTTGGATTTAAGCAAAATCAACGGAAATTATCCGGCCGCCGCTCCCCTGTTTGATGTCAAAAATGGCGATAAA
AACGGCAAAAACGGCAAAAATCGCGTGGAAGTGGAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAATCCGCAA
CGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAACAAATTGCCAGCCAAGAAAATAAAACCGCGCTGTATG
TGTATGATTTGAAAGACACCTTAGGTACGCCGATTGCAAAAATCGAAGTGAAGGGCGGCAAAGGCGGGCTTTCGTCCCCC
ACGCTGGTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCGGGGCGGGAATATGTACCGCTTTGA
TTTGAGCAATTCCGATCCTAGTAAATGGTCTGTAAGCACTATTTTCGAAGGCGGGAAGCCGATTACCTCCGCGCCCGCCG
TTTCCCGACTGGCAGACAAACGCGTCGTCATCTTCGGTACGGGCAGCGATTTGACCGAAGATGATGTACTCGATACGAAA
GAACAATATATTTACGGTATCTTTGACGACGATAAGGGGACGGGGACGGTTAAGGTAACGGTACAAAACGGCACGGGAGG
CGGGCTGCTCGAGCAAACGCTTACGAAGGAAAATAACACCTTGTTCCTGAGCAATAATAAGGCATCCGGCGGATCGAACG
GCAAAGGGTGGGTAGTGAGATTGAGGGAAGGAGAACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTC
ACCATCCGTAGCTATACGGGTAATGACAAATGCGGCGCGCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGC
ATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGAAGCCAATACGGCTGTCGCACAATATTCCGGCCATAAGAAAACCG
CCGGCGGCAAGTCCGTCCCCATAGGCTGCATGTGGAAAAACAGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAG
CCGGTTAATGTGCGTTATCTGGATGAAACGGAAACAGACGGATTTTCAACGACGGCGGACGGCGATGCGGGCGGCAGCGG
TATAGACCCCGCCGGCAGGCGTCCCGGCAAAAACAACCGCTGCTTCTCCAAAAAAGGTGTGCGCACCCTGCTGATGAACG
ATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(504-847)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

74.525

100

0.756

Multiple sequence alignment