Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   CKV76_RS00635 Genome accession   NZ_LT906440
Coordinates   104773..105318 (-) Length   181 a.a.
NCBI ID   WP_047917631.1    Uniprot ID   A0AA44U8U6
Organism   Neisseria gonorrhoeae strain NCTC13798     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 99773..110318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV76_RS00620 (SAMEA4076741_00087) - 100779..101291 (-) 513 WP_003687349.1 shikimate kinase -
  CKV76_RS00630 (SAMEA4076741_00088) pilQ 102559..104754 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  CKV76_RS00635 (SAMEA4076741_00089) pilP 104773..105318 (-) 546 WP_047917631.1 pilus assembly protein PilP Machinery gene
  CKV76_RS00640 (SAMEA4076741_00090) - 105336..105983 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  CKV76_RS00645 (SAMEA4076741_00091) pilN 105984..106583 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  CKV76_RS00650 (SAMEA4076741_00092) pilM 106586..107701 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  CKV76_RS00655 (SAMEA4076741_00093) - 107853..110249 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence


Protein


Download         Length: 181 a.a.        Molecular weight: 20097.62 Da        Isoelectric Point: 4.7529

>NTDB_id=1147170 CKV76_RS00635 WP_047917631.1 104773..105318(-) (pilP) [Neisseria gonorrhoeae strain NCTC13798]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPATEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1147170 CKV76_RS00635 WP_047917631.1 104773..105318(-) (pilP) [Neisseria gonorrhoeae strain NCTC13798]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCACAGAACAAAATTAA

Domains


Predicted by InterproScan.

(22-163)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

97.79

100

0.978


Multiple sequence alignment