Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CKV76_RS00330 Genome accession   NZ_LT906440
Coordinates   52924..56076 (-) Length   1050 a.a.
NCBI ID   WP_095197782.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC13798     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47924..61076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV76_RS00285 (SAMEA4076741_00045) - 49413..49802 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  CKV76_RS00295 (SAMEA4076741_00046) - 49965..50344 (-) 380 Protein_49 VOC family protein -
  CKV76_RS00300 (SAMEA4076741_00047) carA 50398..51531 (-) 1134 WP_003694721.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  CKV76_RS00330 (SAMEA4076741_00048) pilC 52924..56076 (-) 3153 WP_095197782.1 PilC family type IV pilus tip adhesin Machinery gene
  CKV76_RS00350 (SAMEA4076741_00049) apbC 57485..58564 (-) 1080 WP_003699443.1 iron-sulfur cluster carrier protein ApbC -
  CKV76_RS00360 (SAMEA4076741_00051) - 58938..59447 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  CKV76_RS00370 (SAMEA4076741_00052) nadR 59788..60228 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  CKV76_RS00375 (SAMEA4076741_00053) hpaC 60343..60843 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 1050 a.a.        Molecular weight: 115045.22 Da        Isoelectric Point: 9.9307

>NTDB_id=1147168 CKV76_RS00330 WP_095197782.1 52924..56076(-) (pilC) [Neisseria gonorrhoeae strain NCTC13798]
MNKTLKRRVFRHTALYAAILMFSHTGGGGQAQAQTYKYAIVMNERKQPEVKWKGQYNQSALKDKGRERTFSHTSQKNKFG
ITSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIHTTRPGLAGYGYDGIRCGSAQDCPKL
TYKTRFSFDNPNLVKTRGGLDRHTEPSRENSPIYKLKDHPWLGVSFNLGGEGTAKDGRSSSKLVSSFDENNSNSNQNLVY
TTEGHRISLGNWQRETTAMAYYLNAKLHLLDKKQIENIAPGKTVRLGVLKPSIDVKTQNTGLSGLLNFWSKWDIKDNGQI
PVKLGLPQVKAGRCINKPNPNKNTKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTQTDPARPGR
HSLAALDTQNIKSREPNFNSRQTVIRLPGGVYKINPVKNGGRVAGFNGNDGKNDTFGIYKDRLVTPEADEWSEVLLPWTA
RYYGNDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDER
SYELKLSYIPGTMERKDIENQDSTLAKELRTFAEKGYVGDRYGVDGGFVLRSITDDQDRQKHFFMFGAMGLGGRGAYALD
LSKIDSNPVGVSMFDVQNESKNNGVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKQIASQENKTALYVYDLGNGSGSLIK
KIEVQGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSNSDPSKWSVSTIFEGGKPITSAPAVSRLADKRVVIFG
TGSDLTEDDVLDTKEQYIYGIFDDDKGTGTVKVTVQNGTGGGLLEQTLTKENNTLFLSNNKASGGSNGKGWVVRLREGER
VTVKPTVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDHDSVAQYSGHKKTADGKSVPIGCMWKN
GKTACPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGI
KRLSWREVFF

Nucleotide


Download         Length: 3153 bp        

>NTDB_id=1147168 CKV76_RS00330 WP_095197782.1 52924..56076(-) (pilC) [Neisseria gonorrhoeae strain NCTC13798]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGCAGGCGCAGGCGCAAACGTATAAATACGCTATTGTGATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGAAGG
GTCAATATAATCAATCAGCATTAAAGGACAAAGGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACAAATTCGGC
ATCACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGC
CACCTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGA
TTCATACCACCCGGCCCGGGCTGGCAGGCTACGGCTACGACGGTATCCGTTGCGGAAGTGCCCAAGACTGTCCCAAACTT
ACCTATAAAACCCGATTTTCCTTCGATAATCCCAACTTGGTAAAAACAAGAGGCGGGCTGGATAGGCACACAGAGCCAAG
CCGCGAAAATTCGCCCATTTACAAATTGAAGGATCATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGGCGAGGGTACCG
CCAAAGATGGCAGATCATCCAGCAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTAT
ACGACAGAAGGCCACCGTATTTCCCTTGGCAACTGGCAGCGCGAAACGACCGCCATGGCCTATTATCTGAACGCCAAGCT
GCACCTGCTGGACAAAAAACAGATTGAAAATATCGCGCCAGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCG
ATGTGAAGACACAAAATACGGGGCTTAGCGGCTTGCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATT
CCGGTCAAGCTCGGCCTGCCGCAAGTCAAAGCAGGCCGCTGCATCAATAAACCGAACCCCAATAAGAATACCAAAGCCCC
TTCGCCGGCCCTGACCGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTT
CTACCTACCCCGGCAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGACCCCGCCCGGCCCGGCCGG
CATTCCCTCGCCGCTTTGGATACGCAGAACATCAAAAGCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATT
GCCGGGCGGCGTGTACAAGATCAACCCGGTCAAGAACGGCGGCCGGGTCGCGGGTTTTAATGGCAATGACGGCAAAAACG
ACACTTTCGGCATCTACAAGGACAGGCTCGTCACACCTGAGGCCGACGAGTGGAGCGAAGTGCTGCTGCCTTGGACGGCT
CGGTATTACGGTAATGACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAG
CCAAAAATACCGCATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAA
CGGCGGTCGGCGGGTATCTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACGGATGAACGC
AGCTACGAACTGAAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAGGATATTGAAAACCAAGACTCCACCCTCGCCAA
AGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCAGCATTA
CAGATGACCAAGACAGGCAAAAACATTTCTTTATGTTCGGCGCAATGGGCCTTGGCGGCAGAGGCGCATACGCCTTGGAT
TTAAGCAAAATCGACAGCAACCCGGTCGGCGTTTCCATGTTTGATGTCCAAAACGAGAGTAAAAATAATGGCGTGAAATT
AGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGG
CTAAACAAATTGCCAGCCAAGAAAATAAAACCGCGCTGTATGTGTATGATTTGGGAAACGGCAGTGGTAGTCTGATTAAA
AAAATCGAAGTGCAGGGCGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGTCGATAT
CGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCAATTCCGATCCTAGTAAATGGTCTGTAAGCA
CTATTTTCGAAGGCGGGAAGCCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTCGTCATCTTCGGT
ACGGGCAGCGATTTGACCGAAGATGATGTACTCGATACGAAAGAACAATATATTTACGGTATCTTTGACGACGATAAGGG
GACGGGGACGGTTAAGGTAACGGTACAAAACGGCACGGGAGGCGGGCTGCTCGAGCAAACGCTTACGAAGGAAAATAACA
CCTTGTTCCTGAGCAATAATAAGGCATCCGGCGGATCGAACGGCAAAGGGTGGGTAGTGAGATTGAGGGAAGGAGAACGC
GTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTCACCATCCGTAGCTATACGGGTAATGACAAATGCGGCGC
GCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATC
ACGATTCGGTTGCGCAATATTCCGGCCATAAGAAAACCGCCGACGGCAAGTCCGTCCCTATAGGCTGTATGTGGAAAAAC
GGCAAAACCGCCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGA
TTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGT
GCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATC
AAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(525-861)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

69.972

100

0.706

Multiple sequence alignment