Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CKV83_RS10830 Genome accession   NZ_LT906439
Coordinates   2305601..2306977 (+) Length   458 a.a.
NCBI ID   WP_083903319.1    Uniprot ID   -
Organism   Streptococcus merionis strain NCTC13788     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2300601..2311977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS10805 (SAMEA4412692_02159) - 2300851..2301696 (-) 846 WP_018374135.1 Rgg/GadR/MutR family transcriptional regulator -
  CKV83_RS10810 (SAMEA4412692_02160) - 2301809..2303083 (+) 1275 WP_018374136.1 S41 family peptidase -
  CKV83_RS10815 (SAMEA4412692_02161) - 2303155..2304189 (+) 1035 WP_018374137.1 DNA glycosylase AlkZ-like family protein -
  CKV83_RS10820 (SAMEA4412692_02162) - 2304586..2305035 (+) 450 WP_026216994.1 dUTP diphosphatase -
  CKV83_RS10825 (SAMEA4412692_02163) - 2305045..2305584 (+) 540 WP_018374139.1 histidine phosphatase family protein -
  CKV83_RS10830 (SAMEA4412692_02164) radA 2305601..2306977 (+) 1377 WP_083903319.1 DNA repair protein RadA Machinery gene
  CKV83_RS10835 (SAMEA4412692_02165) - 2307383..2307829 (+) 447 WP_018374141.1 LytTR family DNA-binding domain-containing protein -
  CKV83_RS10840 (SAMEA4412692_02166) - 2307831..2308532 (+) 702 WP_018374142.1 hypothetical protein -
  CKV83_RS10845 (SAMEA4412692_02167) - 2308634..2309926 (+) 1293 WP_018374143.1 MFS transporter -
  CKV83_RS10850 (SAMEA4412692_02168) - 2309935..2310795 (-) 861 WP_018374144.1 hypothetical protein -
  CKV83_RS10855 (SAMEA4412692_02169) - 2310915..2311241 (+) 327 WP_018374145.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49904.39 Da        Isoelectric Point: 6.0983

>NTDB_id=1147161 CKV83_RS10830 WP_083903319.1 2305601..2306977(+) (radA) [Streptococcus merionis strain NCTC13788]
MEEHIIAKKKSTFICQSCDYHSPKYLGRCPNCGSWSSFVEEVQVAEVKNARVSVTGEQAKPIKLNEVESSSIARTQTEME
EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASLGTVLYVSGEESAQQIKLRAERLGDINNEFYLFAETNMQRI
RAEIEKIQPDFLIVDSIQTVMSPDITSVQGSVSQVREVTGELLQLAKTNNMATFIVGHVTKEGTLAGPRMLEHMVDTVLY
FEGERQHTFRILRAVKNRFGSTNEIGIFEMQSSGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTV
FGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQDCFIGEIGL
TGEIRRVNRIEQRINEAAKLGFTKIYAPKNSLTGLKLPKAIEVIGVVTLGEVLKKVFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1147161 CKV83_RS10830 WP_083903319.1 2305601..2306977(+) (radA) [Streptococcus merionis strain NCTC13788]
ATTGAGGAACACATCATCGCTAAGAAGAAATCAACCTTTATCTGCCAGTCCTGTGACTACCATTCGCCCAAATATCTGGG
CCGTTGTCCTAACTGTGGCTCTTGGTCTTCTTTTGTAGAAGAAGTTCAGGTTGCAGAGGTCAAAAATGCCCGCGTTAGCG
TAACGGGTGAGCAAGCTAAGCCTATCAAACTAAATGAAGTTGAGTCCAGCTCAATCGCCCGTACCCAGACGGAGATGGAA
GAGTTTAACCGTGTGCTGGGTGGTGGTGTTGTCCCAGGTAGTTTGGTGCTTATTGGGGGCGATCCCGGTATCGGAAAATC
AACTCTGCTCTTGCAGGTCTCAACCCAACTGGCCAGTCTTGGGACTGTGCTCTACGTCTCTGGAGAAGAATCAGCCCAGC
AAATCAAACTTCGGGCAGAACGTCTGGGTGACATCAACAACGAATTTTACCTCTTTGCCGAGACGAATATGCAGCGGATT
CGGGCGGAAATTGAGAAGATCCAGCCAGATTTTCTGATTGTTGACTCGATCCAAACGGTCATGTCGCCAGACATCACTAG
TGTCCAAGGCTCAGTCAGTCAGGTTCGTGAGGTGACTGGGGAACTCCTGCAGCTGGCCAAGACCAATAACATGGCGACCT
TCATCGTGGGGCATGTGACCAAGGAAGGGACATTGGCTGGTCCTCGTATGTTGGAGCACATGGTGGACACCGTGCTTTAT
TTTGAAGGCGAGCGTCAGCACACCTTTCGCATTTTACGGGCTGTCAAAAATCGCTTCGGCTCAACAAATGAAATCGGCAT
CTTTGAGATGCAATCTTCTGGATTGGTCGAAGTGCTCAATCCTAGTCAGGTCTTCCTAGAAGAGCGGCTGGACGGGGCAA
CGGGCTCAGCTATCGTGGTGACCATGGAAGGAACACGCCCGATCTTAGCTGAGGTTCAGGCCTTGGTAACGCCAACCGTC
TTTGGAAATGCTAAACGAACGACAACAGGACTTGATTTTAACCGCGCTAGTCTTATTATGGCGGTTCTGGAAAAGCGGGC
GGGCCTTCTCCTACAAAATCAAGATGCCTACCTTAAGTCCGCTGGTGGTGTCAAACTGGACGAGCCAGCCATTGATTTGG
CTGTGGCTGTTGCTATCGCTTCGAGTTACAAGGACAAGCCGACCAATCCTCAGGACTGTTTTATCGGAGAGATCGGTTTG
ACCGGTGAAATTCGTCGTGTTAATCGCATTGAGCAACGCATTAACGAGGCTGCTAAACTAGGCTTTACTAAGATCTACGC
TCCAAAAAATTCTCTCACAGGACTTAAGCTACCTAAAGCTATTGAGGTCATTGGTGTTGTGACCTTGGGGGAAGTGCTTA
AAAAAGTCTTTGGTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)

AAA domain (AAA_25)

(67-223)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.496

98.69

0.873
  radA Streptococcus pneumoniae D39

88.496

98.69

0.873
  radA Streptococcus pneumoniae R6

88.496

98.69

0.873
  radA Streptococcus pneumoniae TIGR4

88.496

98.69

0.873
  radA Streptococcus mitis NCTC 12261

88.053

98.69

0.869
  radA Streptococcus mitis SK321

88.053

98.69

0.869
  radA Bacillus subtilis subsp. subtilis str. 168

63.676

99.782

0.635

Multiple sequence alignment