Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CKV83_RS00475 Genome accession   NZ_LT906439
Coordinates   99340..101103 (+) Length   587 a.a.
NCBI ID   WP_018372990.1    Uniprot ID   -
Organism   Streptococcus merionis strain NCTC13788     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 94340..106103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS00465 (SAMEA4412692_00094) - 97097..97591 (+) 495 WP_018372988.1 MarR family winged helix-turn-helix transcriptional regulator -
  CKV83_RS00470 (SAMEA4412692_00095) rcrP 97584..99350 (+) 1767 WP_018372989.1 ABC transporter ATP-binding protein Regulator
  CKV83_RS00475 (SAMEA4412692_00096) rcrQ 99340..101103 (+) 1764 WP_018372990.1 ABC transporter ATP-binding protein Regulator
  CKV83_RS00480 (SAMEA4412692_00097) - 101601..102575 (+) 975 WP_018372991.1 LacI family DNA-binding transcriptional regulator -
  CKV83_RS00485 (SAMEA4412692_00098) - 102890..103807 (+) 918 WP_018372992.1 sugar ABC transporter permease -
  CKV83_RS00490 (SAMEA4412692_00099) - 103817..104704 (+) 888 WP_018372993.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65066.32 Da        Isoelectric Point: 6.2421

>NTDB_id=1147116 CKV83_RS00475 WP_018372990.1 99340..101103(+) (rcrQ) [Streptococcus merionis strain NCTC13788]
MATKKSNLLTQLTPHIKGFKFPFVIAVLGAVIANIITVYGPQQISKITNLITEGIMGVMDIEMIGRLSLFMAILYITSAV
INYLQAFILNTIVQRFSRRLRSAIAHKINRVPLSYFDSHSQGDTLSRVTNDVDTASQSLTQSVGTLITSVTLLVGAVAMM
FVTNHLLALTAIVSTAVGFVGVTLIMGRARGFFKAQQANLAAINGYVEESYTGHNVITSYNAIEENLARFATLNSNLYQS
MWKSQFISGIMMPMMMFIGNFSYVMVCVIGSVLLINGHISMGVIVAFMMYVRIFSQPLQQLSQALTQLQAASAAMERVLE
FLNEEELEDESSKIRQLKEVKGRVTFEKVFFGYNSDKTIIHDFSAQAKPGQKVAIVGPTGAGKTTIVNLLMKFYEIDSGR
IAIDGVDIKDMTRSEVHDQFSMVLQDTWLFEGTIRDNLVYNQKNISEEQVLSATKAVGVHHFIMTLPEGYDTVLDDTVTL
SVGQRQLLTIARALLKDAPLLILDEATSSVDTRTEELIQQAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMTQSGFYANLYNSQFEKGNEEVA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=1147116 CKV83_RS00475 WP_018372990.1 99340..101103(+) (rcrQ) [Streptococcus merionis strain NCTC13788]
ATGGCAACTAAAAAATCAAATCTGTTGACCCAGTTGACACCTCATATCAAGGGCTTCAAATTTCCTTTTGTGATTGCCGT
TTTGGGAGCTGTTATAGCCAATATCATCACAGTTTATGGGCCACAGCAAATCAGCAAGATAACCAACCTGATTACAGAAG
GTATCATGGGGGTTATGGATATCGAAATGATTGGGCGCCTAAGTCTCTTTATGGCTATTTTGTATATTACCAGTGCGGTC
ATCAACTACCTGCAGGCCTTTATCCTAAACACGATCGTGCAGCGCTTTTCTCGACGTCTACGCTCTGCTATTGCCCATAA
AATCAACCGTGTTCCTCTAAGTTATTTTGATAGTCACTCTCAAGGCGACACCTTATCGCGAGTGACCAATGATGTAGACA
CGGCGTCTCAGTCTCTGACCCAGAGTGTGGGGACACTCATCACATCGGTAACCCTATTGGTAGGTGCAGTGGCCATGATG
TTTGTGACCAATCATTTGCTGGCCTTGACCGCTATTGTCTCGACAGCTGTCGGTTTTGTTGGAGTGACTTTGATTATGGG
GCGGGCACGTGGCTTTTTCAAGGCACAGCAGGCTAACCTAGCAGCTATCAATGGTTATGTTGAGGAATCTTACACGGGCC
ACAATGTCATTACCAGCTATAACGCAATTGAGGAAAATTTGGCCCGTTTTGCAACCTTAAATAGCAATCTCTACCAATCC
ATGTGGAAATCTCAGTTTATCTCAGGTATCATGATGCCTATGATGATGTTTATTGGTAATTTTAGTTATGTTATGGTCTG
TGTGATTGGTTCGGTTTTGCTGATTAACGGTCATATAAGCATGGGAGTTATTGTGGCTTTTATGATGTATGTCCGGATCT
TCTCACAGCCTCTACAACAGCTCTCTCAAGCCTTGACCCAACTCCAGGCTGCTAGCGCAGCTATGGAGCGTGTTTTGGAA
TTTCTGAATGAAGAAGAATTGGAAGACGAATCCAGCAAGATTCGCCAATTGAAAGAAGTCAAGGGGCGTGTGACTTTCGA
GAAAGTCTTCTTTGGTTACAATTCTGACAAGACCATCATTCATGATTTTTCAGCTCAGGCCAAACCTGGTCAAAAAGTAG
CTATTGTTGGTCCGACTGGGGCAGGAAAGACCACTATTGTCAACTTGCTCATGAAGTTTTACGAGATTGACAGTGGACGG
ATTGCTATTGATGGTGTGGATATCAAGGACATGACGAGAAGTGAAGTCCACGACCAGTTTTCTATGGTCTTGCAGGATAC
TTGGCTTTTTGAGGGGACGATTAGGGATAATCTTGTCTATAATCAAAAAAATATCAGCGAGGAGCAAGTGTTGTCTGCAA
CCAAAGCTGTCGGTGTTCATCATTTCATCATGACTTTGCCAGAAGGGTACGATACGGTTCTTGACGACACGGTTACACTT
TCAGTTGGTCAGCGTCAGCTCTTGACCATTGCTCGTGCTCTGTTGAAAGACGCTCCTCTTCTCATTCTGGATGAAGCGAC
TTCTTCAGTTGATACGCGGACAGAAGAGCTGATTCAGCAAGCTATGGACAAGCTCATGGAAGGTCGGACCAGCTTTGTCA
TCGCTCATAGATTGTCAACCATCCGTAATGCTGATCTGATATTGGTCATGAAAGATGGCAATATCATTGAGCAGGGTAAC
CACGATGAACTCATGACCCAGTCAGGCTTCTATGCTAATCTCTACAATTCTCAGTTTGAAAAAGGGAATGAAGAGGTCGC
TTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(24-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

65.758

100

0.658

Multiple sequence alignment