Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CKV83_RS00470 Genome accession   NZ_LT906439
Coordinates   97584..99350 (+) Length   588 a.a.
NCBI ID   WP_018372989.1    Uniprot ID   A0A239SL55
Organism   Streptococcus merionis strain NCTC13788     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 92584..104350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS00455 (SAMEA4412692_00092) - 92617..93711 (+) 1095 WP_018372986.1 PTS fructose transporter subunit IIC -
  CKV83_RS00460 (SAMEA4412692_00093) mngB 93769..96432 (+) 2664 WP_018372987.1 mannosylglycerate hydrolase -
  CKV83_RS00465 (SAMEA4412692_00094) - 97097..97591 (+) 495 WP_018372988.1 MarR family winged helix-turn-helix transcriptional regulator -
  CKV83_RS00470 (SAMEA4412692_00095) rcrP 97584..99350 (+) 1767 WP_018372989.1 ABC transporter ATP-binding protein Regulator
  CKV83_RS00475 (SAMEA4412692_00096) rcrQ 99340..101103 (+) 1764 WP_018372990.1 ABC transporter ATP-binding protein Regulator
  CKV83_RS00480 (SAMEA4412692_00097) - 101601..102575 (+) 975 WP_018372991.1 LacI family DNA-binding transcriptional regulator -
  CKV83_RS00485 (SAMEA4412692_00098) - 102890..103807 (+) 918 WP_018372992.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 64600.97 Da        Isoelectric Point: 6.9251

>NTDB_id=1147115 CKV83_RS00470 WP_018372989.1 97584..99350(+) (rcrP) [Streptococcus merionis strain NCTC13788]
MLKLLRRFTGVEVAMLLVTVVLVACSVWLDLELPAYMSEITTILQTPGSTVTDLQDPAFKMVGLSLASFAVTVVVGFVAA
RVAASFTTRLRSDVYHQVMDYSQAEIKRFSIPSLLTRTTNDLTQLQTTITMGLQVVTKGPMMALWAVTKIAGKSGQWLMA
VGAAVAVVLLMLLVFLFLAFPKQRRIQGLVDNLNALTRESLTGIRVVRAYNAEDYQTDKFNHANDELTRLQLFVGRLFSL
MGPVMSFVSSFLTLVIYWIGAHLISEAAMEAKVGLFADMVVFTSYGMQIIIGFMMMMMVFMILPRAMVSAGRINDVLTLD
SSILYPEQTKSTSDAKGQVVFEDVSFRYSKTSEAVIEHVSFRANAGDTIAFIGSTGSGKSTLVNLIPRFYDATQGHVLVN
GVNVKDYDQKNLHNLVGYIPQKAVLFSGTVRSNMAMGESKAGQLTDSDIWEALELAQGKGFVQALDKGLDAEVAQNGTNF
SGGQRQRLAIARALARKPEILIFDDSFSALDYQTDKALRQALNERTAGLTKLIVAQRISTIMDADQILVLDQGKVVGQGT
HRELLATNPIYQEIAYSQLSKEELEHGN

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=1147115 CKV83_RS00470 WP_018372989.1 97584..99350(+) (rcrP) [Streptococcus merionis strain NCTC13788]
ATGCTTAAATTATTACGACGTTTTACAGGAGTAGAAGTAGCCATGTTGCTGGTGACGGTAGTCTTGGTCGCTTGCAGTGT
TTGGCTGGACTTGGAACTACCGGCTTATATGTCTGAGATTACGACGATTCTACAAACGCCAGGATCGACTGTTACGGATC
TACAAGACCCTGCTTTTAAGATGGTTGGCCTATCTTTGGCTAGTTTCGCAGTAACGGTTGTGGTCGGATTTGTCGCTGCT
AGGGTGGCGGCTTCTTTCACAACACGTTTGCGAAGCGATGTTTACCACCAAGTCATGGATTATTCGCAAGCAGAAATCAA
ACGGTTTTCCATTCCAAGTCTTTTGACGCGGACGACCAACGACTTGACACAGCTCCAAACGACGATTACCATGGGATTGC
AGGTCGTGACCAAAGGACCGATGATGGCGCTTTGGGCGGTGACCAAGATTGCTGGGAAGTCTGGGCAATGGTTGATGGCG
GTAGGAGCGGCAGTTGCTGTTGTCCTTCTGATGCTTTTGGTTTTTCTCTTTCTGGCTTTTCCAAAACAACGGCGTATTCA
AGGTTTGGTTGATAACCTCAACGCCCTTACTCGTGAAAGTTTGACAGGGATTCGTGTGGTTCGTGCCTACAATGCTGAAG
ACTACCAGACAGATAAGTTCAATCACGCTAACGATGAATTGACCAGACTGCAACTGTTTGTCGGACGACTCTTCTCACTT
ATGGGACCTGTCATGAGTTTTGTCTCGTCCTTCTTGACCTTGGTCATTTACTGGATTGGGGCTCATTTGATTTCAGAAGC
TGCTATGGAGGCTAAAGTTGGGCTTTTTGCTGATATGGTAGTCTTTACCTCCTATGGGATGCAGATTATCATCGGGTTCA
TGATGATGATGATGGTCTTCATGATTTTGCCTCGGGCTATGGTGTCTGCTGGTCGTATCAATGACGTTTTGACGCTTGAT
AGCAGCATTCTTTATCCTGAGCAGACAAAAAGCACGTCTGATGCAAAAGGCCAAGTCGTTTTTGAAGATGTGTCCTTCCG
ATACAGCAAGACCTCAGAGGCTGTTATTGAGCATGTTTCTTTTAGGGCTAATGCTGGTGATACAATCGCATTTATTGGCT
CGACAGGTTCTGGGAAATCAACTCTGGTAAACTTGATTCCACGTTTTTATGATGCAACGCAGGGACACGTTTTGGTCAAT
GGTGTCAACGTCAAGGACTACGACCAAAAAAACTTGCACAATCTGGTCGGTTATATTCCCCAAAAAGCTGTTCTCTTTTC
AGGAACGGTTCGTTCCAATATGGCTATGGGAGAATCAAAGGCTGGGCAATTGACTGACAGTGACATCTGGGAAGCTCTAG
AATTAGCCCAAGGAAAGGGCTTTGTTCAGGCTCTAGATAAAGGGTTGGACGCTGAAGTAGCTCAAAACGGGACAAACTTC
TCAGGTGGACAGCGGCAACGTTTGGCTATTGCAAGAGCCTTAGCCCGAAAACCTGAGATCTTGATATTTGACGATTCCTT
CTCAGCGCTGGACTATCAGACGGACAAGGCACTGCGCCAAGCGCTTAATGAGCGGACTGCTGGCTTGACGAAGCTGATTG
TTGCACAGCGGATTTCAACTATCATGGACGCAGATCAAATCTTGGTTCTTGACCAAGGCAAGGTGGTTGGCCAGGGAACT
CATCGTGAACTTTTAGCAACAAACCCTATTTACCAAGAAATCGCCTATTCACAATTATCCAAGGAGGAACTCGAACATGG
CAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(17-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239SL55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

64.775

100

0.66

Multiple sequence alignment