Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CKW02_RS11320 Genome accession   NZ_LT906438
Coordinates   2219882..2220232 (+) Length   116 a.a.
NCBI ID   WP_095117844.1    Uniprot ID   -
Organism   Bacillus pumilus strain NCTC10337     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2214882..2225232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW02_RS11300 (SAMEA4076707_02289) gcvT 2215359..2216456 (-) 1098 WP_003215703.1 glycine cleavage system aminomethyltransferase GcvT -
  CKW02_RS11305 (SAMEA4076707_02291) - 2217019..2218689 (+) 1671 WP_095117842.1 DEAD/DEAH box helicase -
  CKW02_RS11310 (SAMEA4076707_02292) - 2218704..2219501 (+) 798 WP_003217448.1 YqhG family protein -
  CKW02_RS11315 (SAMEA4076707_02293) - 2219684..2219848 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  CKW02_RS11320 (SAMEA4076707_02294) sinR 2219882..2220232 (+) 351 WP_095117844.1 transcriptional regulator SinR Regulator
  CKW02_RS11325 (SAMEA4076707_02295) tasA 2220286..2221086 (-) 801 WP_003217403.1 biofilm matrix protein TasA -
  CKW02_RS11330 (SAMEA4076707_02296) sipW 2221144..2221716 (-) 573 WP_003217306.1 signal peptidase I SipW -
  CKW02_RS11335 (SAMEA4076707_02297) tapA 2221768..2222295 (-) 528 WP_003217325.1 amyloid fiber anchoring/assembly protein TapA -
  CKW02_RS11340 (SAMEA4076707_02298) - 2222595..2222873 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  CKW02_RS11345 (SAMEA4076707_02299) - 2222907..2223101 (-) 195 WP_034620826.1 YqzE family protein -
  CKW02_RS11350 (SAMEA4076707_02300) - 2223161..2223544 (-) 384 WP_003217479.1 competence type IV pilus minor pilin ComGG -
  CKW02_RS11355 (SAMEA4076707_02301) comGF 2223541..2224071 (-) 531 WP_226803663.1 competence type IV pilus minor pilin ComGF -
  CKW02_RS20605 comGE 2223980..2224297 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  CKW02_RS11365 (SAMEA4076707_02302) comGD 2224281..2224727 (-) 447 WP_003217424.1 competence type IV pilus minor pilin ComGD -
  CKW02_RS11370 (SAMEA4076707_02303) comGC 2224720..2225013 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 13558.40 Da        Isoelectric Point: 9.8452

>NTDB_id=1147086 CKW02_RS11320 WP_095117844.1 2219882..2220232(+) (sinR) [Bacillus pumilus strain NCTC10337]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKARRGVKRTF

Nucleotide


Download         Length: 351 bp        

>NTDB_id=1147086 CKW02_RS11320 WP_095117844.1 2219882..2220232(+) (sinR) [Bacillus pumilus strain NCTC10337]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
AGCAAGAAGAGGAGTAAAGCGCACATTTTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

96.226

91.379

0.879

Multiple sequence alignment