Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CKW02_RS11125 Genome accession   NZ_LT906438
Coordinates   2185149..2185952 (-) Length   267 a.a.
NCBI ID   WP_003215740.1    Uniprot ID   A0AB34QSQ5
Organism   Bacillus pumilus strain NCTC10337     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2180149..2190952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW02_RS11105 (SAMEA4076707_02249) - 2182359..2182595 (+) 237 WP_003215815.1 DUF2627 domain-containing protein -
  CKW02_RS11110 (SAMEA4076707_02250) - 2182630..2183367 (-) 738 WP_003215878.1 glycerophosphodiester phosphodiesterase -
  CKW02_RS11115 (SAMEA4076707_02252) - 2183593..2184693 (-) 1101 WP_003215741.1 Rap family tetratricopeptide repeat protein -
  CKW02_RS11125 (SAMEA4076707_02254) spo0A 2185149..2185952 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  CKW02_RS11130 (SAMEA4076707_02255) spoIVB 2186238..2187515 (-) 1278 WP_003215755.1 SpoIVB peptidase -
  CKW02_RS11135 (SAMEA4076707_02256) recN 2187714..2189450 (-) 1737 WP_003215540.1 DNA repair protein RecN Machinery gene
  CKW02_RS11140 (SAMEA4076707_02257) ahrC 2189484..2189933 (-) 450 WP_003215836.1 transcriptional regulator AhrC/ArgR -
  CKW02_RS11145 (SAMEA4076707_02258) - 2190093..2190947 (-) 855 WP_003216034.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29946.45 Da        Isoelectric Point: 6.3914

>NTDB_id=1147084 CKW02_RS11125 WP_003215740.1 2185149..2185952(-) (spo0A) [Bacillus pumilus strain NCTC10337]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRRNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1147084 CKW02_RS11125 WP_003215740.1 2185149..2185952(-) (spo0A) [Bacillus pumilus strain NCTC10337]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTAACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATCTAGGCGCATCTTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGAAACAAACCTGAACCGAAACGCAGAAACTTAGATGCGAGCATTACAACGATT
ATTCATGAGATTGGCGTCCCGGCTCATATTAAAGGTTACTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGACAT
CGAGCTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATCGCGAAGAAATTTAACACGACCGCGAGCAGAGTAGAAC
GAGCGATTCGTCATGCGATTGAAGTGGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCAAAACCAACCAATTCTGAATTTATCGCAATGGTGGCTGATCGTCTGCGCTTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884

Multiple sequence alignment