Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CKW02_RS07905 Genome accession   NZ_LT906438
Coordinates   1567878..1568780 (+) Length   300 a.a.
NCBI ID   WP_003211145.1    Uniprot ID   -
Organism   Bacillus pumilus strain NCTC10337     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1562878..1573780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW02_RS07885 (SAMEA4076707_01600) - 1563544..1565280 (+) 1737 WP_003212009.1 hypothetical protein -
  CKW02_RS07890 (SAMEA4076707_01601) - 1565277..1565552 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  CKW02_RS07895 (SAMEA4076707_01602) sucC 1565729..1566889 (+) 1161 WP_003211841.1 ADP-forming succinate--CoA ligase subunit beta -
  CKW02_RS07900 (SAMEA4076707_01603) sucD 1566912..1567814 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  CKW02_RS07905 (SAMEA4076707_01604) dprA 1567878..1568780 (+) 903 WP_003211145.1 DNA-processing protein DprA Machinery gene
  CKW02_RS07910 (SAMEA4076707_01605) topA 1568974..1571049 (+) 2076 WP_003212237.1 type I DNA topoisomerase -
  CKW02_RS07915 (SAMEA4076707_01606) trmFO 1571120..1572424 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CKW02_RS07920 (SAMEA4076707_01607) xerC 1572487..1573404 (+) 918 WP_003211704.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34110.43 Da        Isoelectric Point: 8.5961

>NTDB_id=1147078 CKW02_RS07905 WP_003211145.1 1567878..1568780(+) (dprA) [Bacillus pumilus strain NCTC10337]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGDLVKEEWTIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1147078 CKW02_RS07905 WP_003211145.1 1567878..1568780(+) (dprA) [Bacillus pumilus strain NCTC10337]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCGTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGATCTTGTAAAGGAAGAGTGGACGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGACTTGCACAT
AAAGAGTGCATTAGGAATAAAGGGAAAACGATCGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAAGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTATCCGAGCATCCGCCTTACGTCAAACCAGAAAAGTGGCATT
TCCCCATGAGGAATCGTTTAATTAGTGCGCTCACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACCGCGTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Lactococcus lactis subsp. cremoris KW2

38.889

96

0.373

Multiple sequence alignment