Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CKW02_RS06830 Genome accession   NZ_LT906438
Coordinates   1364775..1365236 (-) Length   153 a.a.
NCBI ID   WP_095117788.1    Uniprot ID   -
Organism   Bacillus pumilus strain NCTC10337     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359775..1370236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW02_RS06810 (SAMEA4076707_01383) - 1360385..1361269 (+) 885 WP_003212107.1 cation diffusion facilitator family transporter -
  CKW02_RS20265 (SAMEA4076707_01384) - 1361330..1361482 (-) 153 WP_003212049.1 hypothetical protein -
  CKW02_RS06815 (SAMEA4076707_01385) - 1361784..1362323 (+) 540 WP_003211813.1 RDD family protein -
  CKW02_RS06820 (SAMEA4076707_01386) - 1362449..1363759 (+) 1311 WP_034620047.1 MFS transporter -
  CKW02_RS06825 (SAMEA4076707_01387) - 1363833..1364741 (+) 909 WP_003212225.1 chemotaxis protein -
  CKW02_RS06830 (SAMEA4076707_01388) kre 1364775..1365236 (-) 462 WP_095117788.1 YkyB family protein Regulator
  CKW02_RS06835 (SAMEA4076707_01389) - 1365462..1366355 (-) 894 WP_003210930.1 helix-turn-helix domain-containing protein -
  CKW02_RS06840 (SAMEA4076707_01390) - 1366468..1367364 (+) 897 WP_003211579.1 DMT family transporter -
  CKW02_RS06845 (SAMEA4076707_01391) - 1367560..1367775 (-) 216 WP_003211341.1 hypothetical protein -
  CKW02_RS20270 (SAMEA4076707_01392) - 1367935..1368111 (+) 177 WP_003211106.1 hypothetical protein -
  CKW02_RS06850 (SAMEA4076707_01393) - 1368176..1369453 (-) 1278 WP_003211422.1 MFS transporter -
  CKW02_RS06855 (SAMEA4076707_01394) - 1369527..1370024 (-) 498 WP_034619946.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17812.45 Da        Isoelectric Point: 10.3020

>NTDB_id=1147075 CKW02_RS06830 WP_095117788.1 1364775..1365236(-) (kre) [Bacillus pumilus strain NCTC10337]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGKKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLRESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1147075 CKW02_RS06830 WP_095117788.1 1364775..1365236(-) (kre) [Bacillus pumilus strain NCTC10337]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGTCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAAAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAACTGCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTCAGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment