Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   CKW02_RS05640 Genome accession   NZ_LT906438
Coordinates   1139344..1139541 (+) Length   65 a.a.
NCBI ID   WP_003211983.1    Uniprot ID   -
Organism   Bacillus pumilus strain NCTC10337     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1134344..1144541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW02_RS05610 (SAMEA4076707_01128) - 1134751..1134930 (+) 180 WP_003211282.1 YjzC family protein -
  CKW02_RS05615 (SAMEA4076707_01129) - 1135101..1136366 (+) 1266 WP_003212461.1 MFS transporter -
  CKW02_RS05620 (SAMEA4076707_01130) - 1136483..1136677 (-) 195 WP_003211779.1 YjzD family protein -
  CKW02_RS05625 (SAMEA4076707_01131) - 1136889..1137629 (+) 741 WP_003211061.1 hypothetical protein -
  CKW02_RS05630 (SAMEA4076707_01132) - 1137705..1138280 (+) 576 WP_003212131.1 hypothetical protein -
  CKW02_RS05635 (SAMEA4076707_01133) med 1138371..1139333 (+) 963 WP_003211430.1 BMP family ABC transporter substrate-binding protein Regulator
  CKW02_RS05640 (SAMEA4076707_01134) comZ 1139344..1139541 (+) 198 WP_003211983.1 ComZ family protein Regulator
  CKW02_RS05645 (SAMEA4076707_01135) - 1139552..1139785 (-) 234 WP_003211181.1 hypothetical protein -
  CKW02_RS05650 (SAMEA4076707_01136) - 1139955..1140893 (+) 939 WP_003212296.1 beta-ketoacyl-ACP synthase III -
  CKW02_RS05655 (SAMEA4076707_01137) fabF 1140915..1142156 (+) 1242 WP_003211631.1 beta-ketoacyl-ACP synthase II -
  CKW02_RS05660 (SAMEA4076707_01138) - 1142234..1143028 (+) 795 WP_003210981.1 DUF2268 domain-containing protein -
  CKW02_RS05665 (SAMEA4076707_01139) - 1143199..1144179 (+) 981 WP_034620002.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7391.42 Da        Isoelectric Point: 4.1652

>NTDB_id=1147068 CKW02_RS05640 WP_003211983.1 1139344..1139541(+) (comZ) [Bacillus pumilus strain NCTC10337]
MQHEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESEKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=1147068 CKW02_RS05640 WP_003211983.1 1139344..1139541(+) (comZ) [Bacillus pumilus strain NCTC10337]
ATGCAGCACGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCGCAGGCAAAAGAAGAATTAGATAAAGC
AGGTATTCAGCTTGAGCCCGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTTATGCAAGAGGCATATGAGCTTG
GAAAAGCAGATGCAGAATCAGAAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.131

93.846

0.677

Multiple sequence alignment