Detailed information
Bioinformatically predicted
Overview
| Name | comK | Type | Regulator |
| Locus tag | CKW02_RS05245 | Genome accession | NZ_LT906438 |
| Coordinates | 1056782..1057360 (+) | Length | 192 a.a. |
| NCBI ID | WP_003212419.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain NCTC10337 | ||
| Function | activate transcription of late competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1051782..1062360
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKW02_RS20675 | - | 1052274..1052885 (-) | 612 | WP_404841025.1 | methyl-accepting chemotaxis protein | - |
| CKW02_RS20680 | - | 1053030..1053569 (-) | 540 | Protein_953 | protoglobin family protein | - |
| CKW02_RS05230 (SAMEA4076707_01051) | - | 1053661..1055193 (-) | 1533 | WP_003211807.1 | FAD-dependent oxidoreductase | - |
| CKW02_RS05235 (SAMEA4076707_01052) | - | 1055339..1056199 (+) | 861 | WP_003211351.1 | SDR family oxidoreductase | - |
| CKW02_RS05240 (SAMEA4076707_01053) | - | 1056263..1056493 (-) | 231 | WP_003210924.1 | IDEAL domain-containing protein | - |
| CKW02_RS05245 (SAMEA4076707_01054) | comK | 1056782..1057360 (+) | 579 | WP_003212419.1 | competence protein ComK | Regulator |
| CKW02_RS05250 (SAMEA4076707_01055) | - | 1057519..1058625 (+) | 1107 | WP_034620012.1 | D-TA family PLP-dependent enzyme | - |
| CKW02_RS05255 (SAMEA4076707_01056) | - | 1058941..1059423 (+) | 483 | WP_003211388.1 | hypothetical protein | - |
| CKW02_RS05260 (SAMEA4076707_01057) | - | 1059455..1060894 (-) | 1440 | WP_003211622.1 | PLP-dependent aminotransferase family protein | - |
| CKW02_RS05265 (SAMEA4076707_01058) | - | 1061039..1062208 (+) | 1170 | WP_003212067.1 | MFS transporter | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22376.45 Da Isoelectric Point: 8.7996
>NTDB_id=1147064 CKW02_RS05245 WP_003212419.1 1056782..1057360(+) (comK) [Bacillus pumilus strain NCTC10337]
MSGISETPLDSYVINQTTMAILPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
MSGISETPLDSYVINQTTMAILPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
Nucleotide
Download Length: 579 bp
>NTDB_id=1147064 CKW02_RS05245 WP_003212419.1 1056782..1057360(+) (comK) [Bacillus pumilus strain NCTC10337]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGATCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAACCTCTGCAAATTATTGAACGCA
GCTGCCGATTCTTCGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATATCCCACAAGCCTCCC
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGATCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAACCTCTGCAAATTATTGAACGCA
GCTGCCGATTCTTCGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATATCCCACAAGCCTCCC
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comK | Bacillus subtilis subsp. subtilis str. 168 |
60.938 |
100 |
0.609 |