Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CKV86_RS11240 Genome accession   NZ_LT906437
Coordinates   1882420..1885521 (+) Length   1033 a.a.
NCBI ID   WP_082299667.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC13799     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1877420..1890521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV86_RS11215 (SAMEA4076765_01951) - 1878117..1878566 (-) 450 WP_003692085.1 CopD family copper resistance protein -
  CKV86_RS11220 (SAMEA4076765_01952) waaA 1878607..1879878 (-) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CKV86_RS11225 (SAMEA4076765_01953) gnd 1879941..1881389 (-) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  CKV86_RS11230 - 1881469..1881732 (-) 264 WP_017147189.1 hypothetical protein -
  CKV86_RS11240 (SAMEA4076765_01954) pilC 1882420..1885521 (+) 3102 WP_082299667.1 PilC family type IV pilus tip adhesin Machinery gene
  CKV86_RS11255 (SAMEA4076765_01955) - 1886491..1886775 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  CKV86_RS11265 (SAMEA4076765_01956) yccS 1887255..1889405 (-) 2151 WP_003697785.1 YccS family putative transporter -

Sequence

Protein


Download         Length: 1033 a.a.        Molecular weight: 112597.08 Da        Isoelectric Point: 9.8755

>NTDB_id=1147047 CKV86_RS11240 WP_082299667.1 1882420..1885521(+) (pilC) [Neisseria gonorrhoeae strain NCTC13799]
MNKTLKRQVFRHTALYAAILMFSHTGGGGGQAQARDYAIVMNGRNQPEVKSNVPSSIKDKDRKREYTHHRYPRGGGSVSF
DNTDTLVSQQSGTAVFGTATYLPPYGKVSGFDTDRLKERANAAGWIRTTRPGLAGYSYADVVCRDITGCPKLVYETKFTF
GQQGLQRKAGNKLDIYEDKSRENSPIYKLKDHPWLGVSFNLGSENTVKNSKSFNKLISFFSEDNNNQNIVSTTRDHPISL
GDSKREHTAVAYYLNAKLHLLDKKEIKDIAPGKTVDLGTLRPRVETIGRGLLDFWATWKIEDKGNITVRLGLPEVKAGRC
TNAAHPNPKVKPLSPALTAPALWFGPAQNGKVQMYSASVSTYPGSSSSKIFLQNLSRNDDKNKPGRYSLKPLSENEIKSK
EPSFMGRQTIIRLDDGVHLIRLSRSKDEVAAFVNLNGNNTGKNDTFGIVKEANVNLDADEWKKVLLPWTVRGPGNDDKFK
SINREPGKYSQRYRIRENGNRDLGDIVNSPIVAVGGYLATAANDGMVHIFKKNGGSDERSYNLKLSYIPGTMPRQYFDND
TSALKDSTLAQELRAFAEKGYVGDRYGVDGGFVLRQVELSGQKHVFMFGAMGLGGRGAYALDLSKINGNYPAAAPLFDVK
NGDNNGKNRVKVELGYTVGTPQIGKIRNGKYAAFLASGYAAKEIGGPTNKTALYVYDLKNTLGTPIAKIEVKDGKGGLSS
PTLVDKDLDGTVDIAYAGDRGGNMYRFDLSDSDSSKWSVSTIFQGTKPITSAPAVSRLADKRVVIFGTGSDLSEEDVVGT
NPQYIYGIFDDDKGTVKVTVQNGTGGGLLEQVLKEENKTLFLNKGSDGSGSKGWVVKLKEGQRVTVKPTVVLRTAFVTIR
KYKDDGCGADTAILGINTADGGALTPRSARPIVPEANTAVAQYSGHKTTSKGKSIPIGCMEKGGKTVCPNGYVYDKPVNV
RYLDETETDGFSTTADGDAGGSGIDPADRRPGKNNRCFSKKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3102 bp        

>NTDB_id=1147047 CKV86_RS11240 WP_082299667.1 1882420..1885521(+) (pilC) [Neisseria gonorrhoeae strain NCTC13799]
ATGAATAAAACTTTGAAAAGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCAGGCGCAAGCCCGTGACTACGCTATTGTCATGAACGGGCGAAACCAGCCCGAGGTAAAGTCGAATGTGC
CATCTTCAATAAAGGACAAAGACAGGAAGCGCGAATATACTCATCATAGGTACCCACGAGGAGGAGGCTCTGTCTCATTC
GACAATACCGATACCCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAA
GGTTTCCGGTTTTGATACCGATAGGCTGAAAGAGCGCGCCAATGCCGCCGGTTGGATTCGTACCACCCGGCCCGGGCTGG
CAGGCTACAGCTACGCCGATGTCGTATGCAGAGACATCACAGGCTGTCCCAAACTTGTCTATGAGACCAAATTTACCTTC
GGTCAACAAGGGTTGCAAAGAAAGGCAGGCAACAAGCTGGATATATACGAAGACAAAAGCCGCGAAAATTCGCCCATTTA
CAAATTGAAGGATCATCCCTGGTTGGGCGTGTCTTTCAATTTGGGCAGCGAGAATACCGTCAAAAATAGCAAATCATTCA
ACAAATTGATATCTTTTTTTAGTGAAGACAATAATAATCAAAACATCGTCTCTACGACACGAGACCACCCTATTTCCCTT
GGCGACTCGAAGCGCGAACATACCGCCGTGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGATAAAAAAGAGATTAA
AGATATCGCGCCAGGCAAAACAGTGGATTTGGGCACCTTGAGACCGCGCGTCGAGACGATAGGACGAGGCTTGCTAGATT
TTTGGGCTACGTGGAAGATTGAAGATAAAGGGAACATTACAGTCCGCCTCGGCCTGCCGGAAGTCAAAGCCGGGCGCTGC
ACCAACGCCGCCCACCCCAATCCCAAGGTCAAACCCCTTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGCCCTGC
GCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCGGCAGCTCGAGCAGCAAAATTTTCCTGCAAA
ACCTTTCCCGCAATGATGACAAAAACAAACCGGGCCGCTATTCCCTCAAACCCTTGAGTGAGAATGAGATTAAAAGTAAA
GAGCCGAGTTTCATGGGGCGGCAAACAATCATCCGATTGGATGACGGCGTACATTTGATCAGACTGAGTAGAAGCAAGGA
TGAGGTCGCCGCTTTTGTCAATTTAAATGGAAACAACACCGGCAAAAACGACACTTTCGGCATTGTTAAGGAAGCGAACG
TCAATCTTGACGCCGACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCCGGTAATGATGATAAATTTAAA
TCAATTAACCGAGAACCAGGCAAATACAGCCAAAGATACCGCATCCGCGAAAACGGCAATCGCGATTTGGGCGACATCGT
CAACAGCCCGATTGTCGCGGTCGGCGGGTATTTGGCAACCGCCGCGAACGACGGGATGGTGCATATCTTCAAAAAAAACG
GCGGCAGTGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCCAATATTTTGATAACGAC
ACTTCCGCTCTCAAAGACTCCACCCTCGCCCAAGAGCTGCGCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGG
CGTGGACGGCGGCTTTGTCTTGCGCCAAGTCGAACTGAGCGGGCAAAAACACGTGTTTATGTTCGGCGCGATGGGTTTGG
GCGGCAGAGGCGCGTATGCCTTGGATTTAAGCAAAATCAACGGAAATTATCCGGCCGCCGCTCCCCTGTTTGATGTCAAA
AATGGCGATAATAACGGCAAAAATCGCGTGAAAGTGGAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAATCCG
CAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAAGAAATTGGCGGCCCAACAAATAAAACCGCGCTGT
ATGTATATGATTTGAAAAACACCTTAGGTACGCCGATTGCAAAAATCGAAGTGAAGGACGGCAAGGGCGGGCTTTCGTCC
CCCACGCTGGTGGATAAAGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTT
TGATTTGAGCGATTCCGATTCTAGTAAATGGTCTGTAAGCACTATTTTCCAAGGCACAAAACCGATTACCTCCGCGCCCG
CCGTTTCCCGACTGGCAGACAAACGCGTGGTCATCTTCGGCACGGGCAGCGATTTGAGTGAAGAGGATGTAGTCGGTACG
AATCCACAATATATTTACGGTATCTTTGACGACGATAAGGGGACGGTTAAGGTAACGGTACAAAACGGCACGGGAGGCGG
GTTGCTCGAGCAAGTGCTTAAAGAGGAAAATAAAACATTATTCCTGAACAAGGGATCCGACGGATCGGGCAGTAAGGGGT
GGGTAGTGAAGCTGAAGGAAGGACAACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATCCGC
AAGTATAAAGACGACGGCTGCGGCGCGGATACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAG
AAGCGCGCGCCCGATTGTGCCGGAAGCCAATACGGCTGTCGCACAATATTCCGGCCATAAGACAACCTCCAAAGGCAAAT
CCATCCCTATAGGTTGTATGGAAAAAGGCGGTAAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTG
CGCTACCTGGATGAAACGGAAACAGACGGATTTTCAACGACGGCGGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGC
CGACAGGCGTCCCGGCAAAAACAACCGCTGCTTCTCCAAAAAAGGGGTGCGCACCCTGCTGATGAACGATTTGGACAGCT
TGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(503-842)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

73.834

100

0.751

Multiple sequence alignment