Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PPSQR21_RS10005 Genome accession   NZ_CP006872
Coordinates   2265131..2266399 (+) Length   422 a.a.
NCBI ID   WP_016821004.1    Uniprot ID   A0A0F0GE54
Organism   Paenibacillus polymyxa SQR-21     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2260131..2271399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPSQR21_RS09980 (PPSQR21_020350) - 2260943..2261197 (+) 255 WP_016821001.1 DUF3243 domain-containing protein -
  PPSQR21_RS09985 (PPSQR21_020360) - 2261427..2262200 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  PPSQR21_RS09990 (PPSQR21_020370) - 2262231..2263352 (+) 1122 WP_025364667.1 helix-turn-helix domain-containing protein -
  PPSQR21_RS26190 (PPSQR21_020380) - 2263437..2263601 (+) 165 WP_013370749.1 hypothetical protein -
  PPSQR21_RS09995 (PPSQR21_020390) - 2263747..2264238 (+) 492 WP_013370750.1 YajQ family cyclic di-GMP-binding protein -
  PPSQR21_RS10000 (PPSQR21_020410) pgsA 2264448..2265035 (+) 588 WP_016821003.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PPSQR21_RS10005 (PPSQR21_020420) cinA 2265131..2266399 (+) 1269 WP_016821004.1 competence/damage-inducible protein A Machinery gene
  PPSQR21_RS10010 (PPSQR21_020430) recA 2266625..2267686 (+) 1062 WP_025364668.1 recombinase RecA Machinery gene
  PPSQR21_RS10015 (PPSQR21_020440) - 2267897..2268646 (+) 750 WP_025364669.1 regulatory protein RecX -
  PPSQR21_RS10020 (PPSQR21_020450) rny 2269008..2270552 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46396.43 Da        Isoelectric Point: 4.8104

>NTDB_id=114699 PPSQR21_RS10005 WP_016821004.1 2265131..2266399(+) (cinA) [Paenibacillus polymyxa SQR-21]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNMDRLQEAVRLAQKRADIILFSGGLGPTQDDLTKDA
IAAVLGRKLQIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAIGDAIAQDGKFYVVLPGPPKELKPMF
ANHAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETRLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVQIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAQRDKETEVYELNLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=114699 PPSQR21_RS10005 WP_016821004.1 2265131..2266399(+) (cinA) [Paenibacillus polymyxa SQR-21]
ATGAAAGCTGAAATTATTGCAGTAGGAACAGAGTTATTACTTGGACAAATAGTAAATACAAATGCCCAATATTTATCACA
AGAGCTAGCTACAATCGGCATTGATGTATATTTTCAGACTGTAGTTGGCGATAACATGGATCGACTTCAGGAAGCGGTAC
GACTTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCTGGTGGGCTGGGACCAACTCAGGACGATTTGACAAAAGATGCG
ATAGCGGCTGTATTGGGGCGGAAATTGCAGATAGATCGTCTTGCCATGGACAAGCTTGATCAGTTTTTCCGGAACCGCGG
GGTCGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGAGCCACTCCGCTTGAAAATGAGACAGGTTTAG
CTATAGGGGATGCGATTGCACAGGACGGTAAATTTTATGTGGTTTTGCCCGGACCGCCTAAGGAGCTTAAACCTATGTTT
GCAAATCATGCTAAACCATGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAGATGCCAATTTATTCGAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACTCGCTTGCTAGATCTGATCCAATCCCAGACGGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTTACGATCCGTATATCCACCAAGGCGGCCAGTGAGAGTGAAGCTTTAATTAAGCTAACGGCT
ACGGAAGTACAAATTCAGCAACGTCTTTCCGAATATATGTATGCAAGTGAAGATGTTACGCTGGAGAAGGTGATTGTAGA
TTTAATGGCCAAACGCGGACTCACTGTGAGTGCGGCGGAAAGCTGTACAGGCGGTATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGTTATTCCAATGAAATGAAGATGAAATTGCTCAATGTGCCC
TATGATTATTTGGAAGGCGATCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCAAGAAT
GATTATGGACAGTGATTTCGGACTTTCCGTTACTGGTGTAGCTGGGCCCGGATATTCCGAGCGGAAGCCAGTCGGTCTGG
TGTATATTGGTATTGCTCAGCGTGACAAGGAAACGGAGGTATATGAGCTAAATTTAAGCGGTAACCGTGAGACCATTCGC
TTGCGATCCGTCAAAGCTATCTTGTACAGATTGTGGCGTCGATTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F0GE54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.244

97.156

0.488
  cinA Streptococcus pneumoniae TIGR4

50

97.156

0.486
  cinA Streptococcus mitis NCTC 12261

49.756

97.156

0.483
  cinA Streptococcus pneumoniae Rx1

49.756

97.156

0.483
  cinA Streptococcus pneumoniae R6

49.756

97.156

0.483
  cinA Streptococcus pneumoniae D39

49.512

97.156

0.481
  cinA Bacillus subtilis subsp. subtilis str. 168

48.02

95.735

0.46
  cinA Streptococcus mutans UA159

45.176

100

0.455
  cinA Streptococcus suis isolate S10

44.819

91.469

0.41

Multiple sequence alignment