Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CKW10_RS13240 Genome accession   NZ_LT906435
Coordinates   3036240..3037613 (-) Length   457 a.a.
NCBI ID   WP_039398772.1    Uniprot ID   A0A5E4YTV1
Organism   Pandoraea sputorum strain NCTC13161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3031240..3042613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW10_RS13225 (SAMEA4530655_02660) cls 3031820..3033247 (+) 1428 WP_039398766.1 cardiolipin synthase -
  CKW10_RS13230 (SAMEA4530655_02661) - 3033452..3035392 (+) 1941 WP_039398768.1 ATP-binding cassette domain-containing protein -
  CKW10_RS13235 (SAMEA4530655_02662) - 3035469..3036170 (+) 702 WP_039398770.1 hypothetical protein -
  CKW10_RS13240 (SAMEA4530655_02663) radA 3036240..3037613 (-) 1374 WP_039398772.1 DNA repair protein RadA Machinery gene
  CKW10_RS13245 (SAMEA4530655_02664) alr 3037636..3038706 (-) 1071 WP_039403417.1 alanine racemase -
  CKW10_RS13250 (SAMEA4530655_02665) lplT 3039045..3040337 (+) 1293 WP_039398774.1 lysophospholipid transporter LplT -
  CKW10_RS13255 (SAMEA4530655_02666) thiD 3040339..3041181 (+) 843 WP_052252913.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CKW10_RS13260 (SAMEA4530655_02667) - 3041254..3042369 (-) 1116 WP_052252914.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48193.38 Da        Isoelectric Point: 6.9985

>NTDB_id=1146960 CKW10_RS13240 WP_039398772.1 3036240..3037613(-) (radA) [Pandoraea sputorum strain NCTC13161]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAEASTGHRYQSLAKSTPIRKLAEIEASDVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRTAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEQAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1146960 CKW10_RS13240 WP_039398772.1 3036240..3037613(-) (radA) [Pandoraea sputorum strain NCTC13161]
ATGGCTAAAGCCAAGACCGTCTATATCTGTACCGAGTGCGGTGGCCAGACCCCCAAGTGGGCTGGCCAGTGTCCCAATTG
CAATGGCTGGAATACGCTCGTCGAATCGGTAGCGGAAGCGTCTACCGGTCATCGCTATCAATCGCTGGCCAAGAGCACGC
CGATTCGCAAACTGGCGGAAATCGAAGCCTCTGATGTACCGCGTTTTTCCAGCGGCGTGAGCGAATTCGATCGCGTGCTG
GGCGGAGGTCTCGTCGCGGGCGGTGTGGTGTTGATCGGCGGTGACCCGGGGATCGGCAAGTCGACGCTGCTGCTGCAATC
GCTCGCGCATCTCGCGCGTGAGCGTCGGGCGTTGTATGTGAGCGGCGAAGAGTCCGGCGCGCAGATTGCGTTGCGTGCGC
AGCGGCTCGGCCTTGGGGCGGCTGGCGAGGGCGGTGGCGAACTCGATCTGCTCGCCGAAATCCAGCTTGAGAAGATTCTC
GGTGCGATCGAATCGGAAAAACCCGACGTCGTCGTCATCGACTCGATTCAGACGATCTATTCCGAAGCGCTGACGTCGGC
CCCGGGATCGGTCGCGCAAGTGCGAGAGTGCGCAGCGCAACTGACGCGCACCGCCAAGCAGAGTGGCGTGACGGTCATCA
TGGTCGGCCACGTGACGAAGGAAGGTAGTCTCGCCGGGCCACGCGTGTTGGAACACATTGTGGACACGGTGCTTTACTTC
GAAGGCGATACGCATTCGTCGTATCGTCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCTGTGAATGAGCTGGGCGTGTT
TGCAATGACGGAAAAGGGGTTGCGTGGCGTGGCCAACCCGTCGGCGCTCTTCCTCTCGCAGCATGAGCAAAGCGTGCCTG
GTTCGTGTGTGCTGGTGACGCAGGAGGGCACACGGCCGCTGCTCGTCGAAGTGCAGGCGCTGGTCGATACTGCGCAGGTG
CCGAATCCGCGACGTCTGGCCGTGGGTCTGGAGCAGAACCGCCTGGCCATGTTGCTGGCGGTGATGCATCGTCATGCGGG
CATCGCCTGTTTCGATCAGGACGTGTTTCTGAATGCCGTCGGCGGTGTGAAGATTACCGAACCGGCTGCCGACCTGGCGG
TGTTGCTCGCGATCCATTCGTCATTGCGCAACAAACCGCTGCCACGAGGCATCGTGGCGTTCGGGGAAGTGGGGCTTGCC
GGGGAAATCCGGCCGAGTCCGCGCGGTCAGGATCGTCTCAAAGAGGCGGCTAAGCTGGGCTTCTCGATTGCGATCATTCC
GAAGGCAAATGCGCCGAAGCAGCCGATCGACGGGCTGGAGGTCCATGCCGTCGACCGTCTGGAACAAGCCATCTCGGTGG
TGGCAGGACTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4YTV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.827

100

0.501
  radA Streptococcus pneumoniae Rx1

49.07

94.092

0.462
  radA Streptococcus pneumoniae D39

49.07

94.092

0.462
  radA Streptococcus pneumoniae R6

49.07

94.092

0.462
  radA Streptococcus pneumoniae TIGR4

49.07

94.092

0.462
  radA Streptococcus mitis SK321

49.07

94.092

0.462
  radA Streptococcus mitis NCTC 12261

49.07

94.092

0.462

Multiple sequence alignment