Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CKV66_RS05350 Genome accession   NZ_LT906434
Coordinates   1148566..1150791 (+) Length   741 a.a.
NCBI ID   WP_085363275.1    Uniprot ID   -
Organism   Neisseria zoodegmatis strain NCTC12230     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1143566..1155791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV66_RS05330 (SAMEA4504057_01051) ubiB 1144606..1146117 (-) 1512 WP_085363124.1 ubiquinone biosynthesis regulatory protein kinase UbiB -
  CKV66_RS05335 (SAMEA4504057_01052) - 1146537..1147238 (+) 702 WP_085363125.1 hypothetical protein -
  CKV66_RS05345 (SAMEA4504057_01053) - 1147521..1148396 (+) 876 WP_085363127.1 cation diffusion facilitator family transporter -
  CKV66_RS05350 (SAMEA4504057_01054) comA 1148566..1150791 (+) 2226 WP_085363275.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CKV66_RS05355 (SAMEA4504057_01055) - 1151087..1151821 (-) 735 WP_095197849.1 ankyrin repeat domain-containing protein -
  CKV66_RS05360 (SAMEA4504057_01056) - 1152127..1154169 (-) 2043 WP_095197850.1 OPT family oligopeptide transporter -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 81044.03 Da        Isoelectric Point: 9.9518

>NTDB_id=1146938 CKV66_RS05350 WP_085363275.1 1148566..1150791(+) (comA) [Neisseria zoodegmatis strain NCTC12230]
MFWLPLWVSGVVVSFALPAVPSWTMLAAVWLCLFAAAWRFRTAAWLLICFSGALYGIGRTQAALEKQWPAVQTASVPLTV
KVADLPQRDDKRVRFTAVARDDARREYRLLLSDYRLRDWPVGSEWRVQARVRPPVGEANLRGFNREAWALANGIGGVGSI
GKERQAAAQNLAGGLSALRDTVSLRWQQTDTRGRDFSDDLGLMRALSIGEQSALSAQAWQAFRPLGLNHLVSISGLHVSM
VAVLAGWLTKQLLRVLPRVPKRPRAWMLAAGLAAALFYAGLAGFSVPTQRSVLMLLALAWAWWRGSGASVWTGWWQALAV
VLLFDPLAVLSAGFWLSFGLVGALLWVSAGRLNERGWLLAVRGQWAVSLLSVVALGSMFASLPLISPLVNALAIPWFSWV
LVPLALLASLLPFGWLQWLAAAAGEYTMRVLVWVAEYAPEYAVAASPPYLLPLAVLAVLMVLLPRGTGWKPLAWLVLAGF
VLYRPPPLAEGRLKVTVWDAGQGLSVLMQTKEHNLLFDTGTEHIANAQILPGLNAAGVRGLDMLVLSHHDTDHDGGFTEI
HQAKQPREIWAGQPEFYQGARFCGERQWQWNGVVFEFLKPSENLKTADDNERSCVLRVLAGGQSLLVTGDLGKRGELALV
EKYGEGLYSQVLVLGHHGSDTSSAGGFLNAVSPQYAVASSGYANAYKHPAAAVQNRVKAHGITLLRTDLSGGLVFELGVG
EEVQVGRLKTDKPYWQRKPFE

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1146938 CKV66_RS05350 WP_085363275.1 1148566..1150791(+) (comA) [Neisseria zoodegmatis strain NCTC12230]
ATGTTTTGGCTGCCGCTTTGGGTAAGCGGCGTTGTTGTTTCGTTTGCTTTGCCCGCCGTGCCGTCTTGGACGATGTTGGC
GGCGGTATGGCTGTGCCTGTTTGCGGCGGCGTGGCGGTTTCGGACGGCGGCGTGGTTGCTGATATGTTTTTCCGGCGCGT
TATACGGCATTGGGCGTACGCAAGCTGCTTTGGAAAAACAATGGCCTGCGGTTCAGACGGCCTCTGTGCCGCTTACAGTA
AAAGTGGCGGATTTGCCGCAGCGCGACGATAAACGGGTGCGTTTTACGGCTGTTGCGCGCGATGATGCGAGGCGGGAATA
CCGTTTGCTGTTGTCCGACTACCGTTTGCGCGATTGGCCGGTCGGCAGCGAATGGCGGGTGCAGGCGCGGGTAAGGCCGC
CGGTGGGCGAGGCGAATCTGCGCGGTTTTAACCGTGAAGCGTGGGCGTTGGCCAACGGCATCGGCGGCGTGGGCAGCATC
GGCAAAGAGCGGCAGGCTGCGGCGCAAAACCTTGCCGGCGGTTTATCGGCTTTGCGCGACACGGTCAGCCTGCGTTGGCA
GCAAACCGATACCCGCGGGCGGGATTTTTCAGACGACCTCGGTTTGATGCGGGCGTTGAGCATCGGCGAGCAATCGGCTT
TGAGCGCGCAGGCTTGGCAGGCGTTCCGGCCTTTGGGTTTGAACCATCTGGTGAGTATTTCCGGCCTGCATGTGAGCATG
GTGGCGGTGCTGGCGGGGTGGCTGACGAAGCAATTGTTGCGTGTGCTGCCGCGCGTACCGAAACGGCCGCGGGCGTGGAT
GCTGGCGGCGGGTTTGGCGGCGGCGTTGTTTTATGCGGGCTTGGCGGGCTTTTCGGTGCCGACGCAGCGCAGCGTGTTGA
TGCTGCTTGCTCTGGCATGGGCTTGGTGGCGTGGCAGCGGTGCGTCGGTGTGGACGGGTTGGTGGCAGGCGCTGGCGGTG
GTGCTGCTGTTCGACCCGTTGGCGGTATTGAGTGCGGGGTTTTGGCTGTCGTTCGGCTTGGTCGGCGCTTTGCTGTGGGT
ATCGGCAGGCCGTCTGAACGAACGCGGTTGGCTGTTGGCGGTGCGCGGGCAATGGGCGGTGTCGCTGTTGTCGGTGGTGG
CGCTGGGCAGTATGTTCGCCTCGCTGCCTTTAATCAGCCCGTTGGTGAATGCGTTGGCGATTCCGTGGTTTTCGTGGGTA
TTGGTGCCGCTGGCTCTGCTGGCTTCGTTGTTACCGTTTGGCTGGCTGCAATGGCTGGCGGCCGCGGCGGGCGAATACAC
CATGCGCGTGTTGGTGTGGGTGGCGGAATATGCGCCCGAATATGCGGTTGCGGCCTCGCCGCCTTATCTGCTGCCGTTGG
CGGTGCTGGCGGTATTGATGGTGCTGCTGCCGCGCGGCACGGGCTGGAAACCGCTGGCGTGGTTGGTGCTGGCGGGCTTT
GTTCTGTACCGCCCGCCGCCGCTTGCGGAAGGCCGTCTGAAAGTAACGGTATGGGACGCGGGGCAGGGTTTGTCGGTGTT
GATGCAGACGAAAGAGCATAATCTGTTGTTCGATACCGGCACGGAGCACATCGCCAACGCGCAGATTCTGCCCGGCCTGA
ATGCTGCGGGTGTGCGCGGTTTGGACATGCTGGTGCTGTCGCATCACGATACCGACCACGACGGCGGTTTCACCGAAATC
CACCAAGCCAAACAGCCGCGCGAAATTTGGGCGGGGCAGCCGGAGTTTTATCAGGGCGCGCGGTTTTGCGGGGAGCGGCA
ATGGCAATGGAACGGCGTGGTGTTTGAGTTTCTGAAGCCGTCTGAAAACTTGAAAACGGCCGACGACAACGAGCGAAGCT
GCGTTCTGCGCGTGCTGGCGGGCGGGCAGTCGCTGCTGGTAACGGGCGATTTGGGCAAACGCGGCGAGCTGGCGTTGGTG
GAAAAATACGGCGAAGGCTTGTACAGCCAAGTGCTGGTGCTGGGGCATCACGGCAGCGACACTTCGTCGGCAGGCGGCTT
TCTGAACGCCGTTTCGCCGCAATACGCCGTGGCTTCGAGCGGCTATGCCAATGCTTACAAACACCCCGCCGCTGCGGTGC
AAAACCGCGTGAAAGCACACGGCATCACGCTGCTGCGTACCGATTTGTCGGGCGGCTTGGTGTTTGAATTAGGCGTGGGG
GAAGAGGTGCAGGTAGGCCGTCTGAAAACGGATAAACCTTATTGGCAGAGGAAGCCGTTTGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-656)

Domain of unknown function (DUF4131) (DUF4131)

(21-162)

Competence protein (Competence)

(206-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

63.514

99.865

0.634

Multiple sequence alignment