Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AQ1685_RS01190 Genome accession   NZ_LT899436
Coordinates   253508..254869 (+) Length   453 a.a.
NCBI ID   WP_095068911.1    Uniprot ID   A0A238U6D1
Organism   Tenacibaculum jejuense strain KCTC 22618(T)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 248508..259869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AQ1685_RS01165 (TJEJU_0236) - 248574..250184 (-) 1611 WP_095068906.1 DUF4270 family protein -
  AQ1685_RS01170 (TJEJU_0237) - 250202..251023 (-) 822 WP_095068907.1 glycogen/starch synthase -
  AQ1685_RS01175 (TJEJU_0238) panC 251119..251970 (+) 852 WP_095068908.1 pantoate--beta-alanine ligase -
  AQ1685_RS01180 (TJEJU_0239) panD 252014..252364 (+) 351 WP_075344580.1 aspartate 1-decarboxylase -
  AQ1685_RS01185 (TJEJU_0240) - 252366..253316 (+) 951 WP_095068909.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  AQ1685_RS01190 (TJEJU_0241) radA 253508..254869 (+) 1362 WP_095068911.1 DNA repair protein RadA Machinery gene
  AQ1685_RS01195 (TJEJU_0242) - 254939..255484 (+) 546 WP_317042154.1 RNA polymerase sigma factor -
  AQ1685_RS01200 (TJEJU_0243) - 255468..255986 (+) 519 WP_095068913.1 hypothetical protein -
  AQ1685_RS01205 (TJEJU_0244) - 256051..257100 (+) 1050 WP_157730040.1 hypothetical protein -
  AQ1685_RS01210 (TJEJU_0245) - 257200..258396 (-) 1197 WP_095068915.1 DUF1501 domain-containing protein -
  AQ1685_RS01215 (TJEJU_0246) - 258409..259782 (-) 1374 WP_095068916.1 DUF1800 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50073.47 Da        Isoelectric Point: 6.5082

>NTDB_id=1146700 AQ1685_RS01190 WP_095068911.1 253508..254869(+) (radA) [Tenacibaculum jejuense strain KCTC 22618(T)]
MPKTKTTFFCQNCGAQHAQWVGQCPNCKQWNTVVEEVIQKEEKRNWKTPSNTQKVVSKPRRIQEIELNTEERIITRNNEL
DVVLGGGLVKGSITLLGGEPGIGKSTLLLQVALQIPQKVLYVSGEESQSQIKMRAERLQNEDSNCLILTETNTQQIFRNV
EEVQPDVLVIDSIQTLYTNNIEASPGSISQIKETSAELIKFAKETNTPVLLIGHINKDGNIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTAELGIYEMLSDGLREVKNPSEILISEKDTDLSGTAIASTLEGVRPLMIEIQALVSTAVYGTP
QRSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNVTGGIYIDDPAIDLAVVAAILSSNQDIAINPDVCFAAEVGLAGEI
RPVSKIDQRIVEAEKLGYKTFVTSKYNKITSKNHSIKLILVGKIEDAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1146700 AQ1685_RS01190 WP_095068911.1 253508..254869(+) (radA) [Tenacibaculum jejuense strain KCTC 22618(T)]
ATGCCAAAAACAAAAACAACTTTTTTCTGTCAGAATTGTGGAGCGCAACACGCGCAATGGGTAGGACAATGTCCGAATTG
TAAACAATGGAATACAGTTGTAGAAGAAGTAATCCAAAAAGAAGAAAAGAGAAATTGGAAAACACCTTCAAATACACAAA
AAGTTGTTTCTAAACCTAGAAGAATTCAAGAAATTGAATTGAATACAGAAGAGCGAATTATTACTCGAAATAATGAGTTA
GATGTAGTTTTAGGTGGTGGATTGGTAAAAGGTTCTATCACGTTATTAGGTGGTGAACCAGGAATTGGTAAATCAACATT
ATTACTGCAAGTTGCTTTACAAATTCCGCAGAAGGTATTGTATGTTTCTGGAGAAGAAAGTCAATCGCAAATTAAAATGC
GAGCTGAACGTTTGCAAAATGAAGATTCAAATTGCTTGATTTTAACAGAAACAAATACACAACAAATCTTTAGAAATGTA
GAAGAAGTTCAGCCTGATGTTTTAGTCATAGATTCTATCCAAACATTATACACGAATAATATTGAAGCTTCACCAGGAAG
TATTTCTCAAATTAAAGAAACTTCCGCTGAGTTGATCAAATTTGCGAAAGAAACAAATACACCAGTTTTATTAATCGGAC
ACATTAATAAAGACGGAAATATAGCGGGACCAAAAATCTTAGAACATATGGTAGATGTTGTGCTTCAGTTTGAAGGAGAC
AGAAATCATACCTATAGAATTTTACGTTCTCAAAAAAACAGATTTGGTTCTACAGCAGAATTAGGAATTTATGAAATGTT
ATCCGACGGTTTACGTGAAGTTAAAAATCCATCAGAGATTTTAATTTCAGAAAAAGATACCGATTTAAGTGGAACAGCAA
TTGCTTCAACTTTAGAAGGTGTTCGTCCGTTAATGATAGAAATTCAAGCTTTAGTAAGTACTGCAGTTTATGGAACTCCA
CAAAGATCTACTACCGGTTATAATTTAAAACGTTTACATATGATTCTGGCTGTTTTAGAGAAACGAGCTGGATTTAAACT
TGGTGCAAAAGATGTGTTCTTAAACGTTACTGGAGGTATTTATATCGACGATCCTGCAATAGATTTAGCTGTTGTGGCAG
CAATTCTTTCTTCAAATCAAGATATTGCAATTAATCCAGATGTATGTTTCGCTGCAGAAGTAGGTTTAGCAGGAGAAATT
CGTCCTGTTTCTAAAATCGATCAACGTATAGTTGAAGCAGAAAAGTTAGGTTATAAAACATTTGTAACTTCAAAATACAA
TAAGATTACATCTAAAAATCATTCGATTAAACTCATTTTAGTGGGTAAGATAGAAGACGCTTTTGCTACATTGTTTGCAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(331-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A238U6D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.796

100

0.492
  radA Streptococcus mitis SK321

48.796

100

0.492
  radA Streptococcus mitis NCTC 12261

48.796

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.796

100

0.492
  radA Streptococcus pneumoniae D39

48.796

100

0.492
  radA Streptococcus pneumoniae R6

48.796

100

0.492
  radA Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.483

Multiple sequence alignment