Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxQ   Type   Regulator
Locus tag   VCBK1071_RS18385 Genome accession   NZ_LT897798
Coordinates   779263..781836 (-) Length   857 a.a.
NCBI ID   WP_101412021.1    Uniprot ID   -
Organism   Vibrio cholerae isolate Vibrio cholerae str. BC1071     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 774263..786836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCBK1071_RS18350 (VCBK1071_03481) - 774678..776063 (+) 1386 WP_084981577.1 phosphatase PAP2/dual specificity phosphatase family protein -
  VCBK1071_RS18355 (VCBK1071_03482) - 776056..776484 (+) 429 WP_084981576.1 hypothetical protein -
  VCBK1071_RS18360 (VCBK1071_03483) - 776699..777004 (-) 306 WP_095466246.1 hypothetical protein -
  VCBK1071_RS18365 (VCBK1071_03484) - 777207..777605 (+) 399 WP_101412019.1 YgiW/YdeI family stress tolerance OB fold protein -
  VCBK1071_RS18375 (VCBK1071_03485) - 777844..778362 (+) 519 WP_000914963.1 hypothetical protein -
  VCBK1071_RS18380 (VCBK1071_03486) - 778606..779271 (+) 666 WP_000268198.1 PilZ domain-containing protein -
  VCBK1071_RS18385 (VCBK1071_03487) luxQ 779263..781836 (-) 2574 WP_101412021.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  VCBK1071_RS18390 (VCBK1071_03488) luxP 781854..782948 (-) 1095 WP_101412023.1 substrate-binding domain-containing protein Regulator
  VCBK1071_RS18395 (VCBK1071_03489) traF 783160..784320 (-) 1161 WP_001025858.1 conjugal transfer protein TraF -
  VCBK1071_RS18400 (VCBK1071_03490) - 784422..784727 (-) 306 WP_000429067.1 GIY-YIG nuclease family protein -
  VCBK1071_RS18405 (VCBK1071_03491) - 784744..785394 (-) 651 WP_101412027.1 YceH family protein -
  VCBK1071_RS18410 (VCBK1071_03492) - 785436..785633 (-) 198 WP_001246071.1 hypothetical protein -
  VCBK1071_RS18415 (VCBK1071_03493) - 785821..786141 (+) 321 WP_001089529.1 DUF496 family protein -
  VCBK1071_RS18425 (VCBK1071_03495) - 786554..786805 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 857 a.a.        Molecular weight: 96959.80 Da        Isoelectric Point: 6.0203

>NTDB_id=1146689 VCBK1071_RS18385 WP_101412021.1 779263..781836(-) (luxQ) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MNIRPSQIKHKQRIASFITHAVVVVMGVLIVSVLFQSYQISSRLMAQEGQRTSVQTSSLIQSLFDFRLAALRIHQDSTAK
NASLINALVSRDSSRLDEFFSSVDELELSNAPDLRFISSHDNILWDDGNASFYGIAQQELNKLIRRVAISGNWHLVQTPS
EGKSVHILMRRSSLIEAGTGQVVGYLYVGIVLNDNFALLENIRSGSNSENLVLAVDTTPLVSTLKGNEPYSLDYVVHSAK
DAMRDSFIVGQTFLEVESVPTYLCVYSIQTNQNVLTLRDNFYFWMAFALISMIGVSIASRWWLQKRIQREIETLMNYTHK
LMDLDTKSEFIGSKIYEFDYFGRTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQNHFL
FEILERQLLPTITKAAQGDNPSDVTTEVDGRVFRWNLSPIMVEGQIISIITQGQDITTIAEAEKQSQAARREAEESARVR
AEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVC
AIDRIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGI
GIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQLPIELVEKPDAQQQLLPAP
DPQPLFDKTLRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVETTRTIKKVLH
LPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTLHKALEHFKHHHGQKNAGLN

Nucleotide


Download         Length: 2574 bp        

>NTDB_id=1146689 VCBK1071_RS18385 WP_101412021.1 779263..781836(-) (luxQ) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
TTGAACATTCGACCTAGCCAAATCAAGCATAAACAGCGCATCGCTTCTTTTATCACCCATGCTGTGGTGGTGGTGATGGG
CGTTCTGATCGTCAGTGTATTATTCCAAAGTTACCAGATCAGTAGCCGCTTGATGGCTCAAGAAGGGCAACGCACCTCAG
TTCAAACCTCCAGCTTGATTCAAAGTTTGTTTGATTTTCGTCTTGCGGCACTGCGAATTCACCAGGACAGCACAGCCAAG
AACGCCAGTTTAATCAACGCACTTGTCAGCCGAGATTCGAGTCGGCTGGATGAATTCTTTTCCAGTGTCGATGAACTTGA
ACTCTCTAATGCGCCAGATCTGCGTTTTATCTCCAGTCACGACAACATCTTGTGGGATGATGGCAACGCCTCTTTTTACG
GCATTGCCCAGCAAGAGCTGAATAAGCTTATCCGCAGAGTGGCGATCAGTGGCAATTGGCACTTGGTTCAAACGCCCAGC
GAGGGAAAATCAGTCCATATTTTGATGCGTCGTTCATCACTGATTGAAGCGGGAACCGGGCAGGTTGTTGGGTATCTGTA
TGTAGGCATCGTACTCAATGATAACTTTGCGCTGTTGGAAAATATCCGCAGTGGCAGTAACTCAGAAAACCTAGTCCTTG
CCGTCGATACTACGCCGCTGGTTTCTACCTTGAAAGGCAATGAACCTTATTCGCTGGACTATGTGGTGCACAGCGCCAAA
GATGCTATGCGCGACAGCTTTATTGTTGGGCAAACCTTCTTAGAAGTGGAAAGTGTACCGACCTATCTGTGCGTCTACTC
GATTCAGACCAACCAAAATGTGCTCACCCTGCGGGATAATTTCTATTTTTGGATGGCGTTTGCGCTGATCAGTATGATCG
GTGTTTCCATCGCGTCACGCTGGTGGCTACAAAAACGCATTCAGCGTGAAATTGAAACCTTGATGAATTACACCCATAAA
TTGATGGATCTGGATACGAAAAGTGAGTTTATCGGTTCAAAAATTTATGAGTTCGACTATTTTGGGCGAACGTTGGAACA
ATCATTCCGTCGTCTCGCCAATAAAGAAAAGCAGTTTGAAGATCTGTTTAACTTTGCGCTCTCACCGACCATGCTTTGGA
ATACCTCTGGTCGGCTGATCCGCATGAACCCCTCAGCGCAAATCCAGTTTTTGCGCGAAGATGCGCAAAACCATTTCTTA
TTTGAGATTCTTGAACGCCAACTGTTGCCGACCATCACTAAGGCGGCACAGGGCGATAATCCGAGTGACGTCACAACCGA
AGTGGATGGTCGTGTGTTCCGCTGGAACCTTTCGCCGATCATGGTGGAAGGGCAGATCATTTCCATCATTACTCAAGGGC
AAGATATCACCACCATCGCGGAAGCGGAGAAACAAAGCCAAGCCGCAAGGCGCGAAGCGGAAGAGTCGGCACGGGTCAGA
GCCGAGTTTTTGGCCAAAATGAGTCACGAATTGCGCACGCCGCTCAATGGTGTGCTCGGTGTTTCCCAACTGCTAAAACG
GACCCCACTCAATGATGAACAGCGCGAACACGTGGCTGTGTTATGCAGCAGTGGTGAACATTTGCTCGCAGTGCTGAATG
ACATCTTGGATTTCTCACGCTTAGAGCAGGGCAAATTCCGTATTCAAAAGAATGAGTTTCGCCTTAAAGAGTTGGTGTGC
GCGATTGACCGCATTTATCGACCTTTATGTAATGAAAAAGGCTTGGAACTGGTGGTGAATTCCAATATCACCACCGCAGC
GATTGTGCGCAGCGATCAGATCCGGATTAACCAAATCTTGTTCAATTTGCTCAATAACGCGATCAAGTTTACTCACCAAG
GTTCGATACGTGTCGAATTGCAATTAATTGAAGGCGATCCGTTAGCTCAACTGGTGATTCAAGTCGTCGATACGGGGATT
GGTATCCGCGAACAAGATTTAACGGTGATTTTTGAACCCTTCATGCAAGCCGAATCGACCACCACTCGAGAGTACGGCGG
AAGTGGTTTAGGCTTAACAATTGTGCACAGTTTAGTGGAAATGCTCAGTGGCCAACTGCACGTCAGCTCCGAGTATGGTA
TCGGTACACGTTTTGAAATTCAGTTACCGATTGAGCTGGTAGAAAAACCGGATGCGCAGCAGCAGTTGTTACCGGCTCCT
GATCCTCAACCGTTATTTGATAAAACTCTGCGTGTACTGTTGGTGGAGGATAACCACACCAACGCCTTTATTGCTCAAGC
ATTCTGTCGTAAGTATGGCTTAGATGTGAGCTGGGTAACCGATGGACTACAGGCGATTGAAGAGCTCAAAATACATGACT
ACGACTTAGTGCTGATGGATAACCAGTTACCCTATCTGGATGGCGTTGAGACCACGCGCACCATCAAAAAAGTGCTGCAC
CTTCCGGTGGTGGTGTATGCCTGTACTGCGGATGGCTTAGAAGAAACACGGCAAGCATTTTTCCATGCGGGCGCGGAATA
TGTATTAGTGAAGCCACTGAAAGAGCAGACTTTGCATAAAGCGCTGGAGCATTTCAAACATCATCATGGCCAAAAAAACG
CTGGCTTAAATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(592-705)

His Kinase A (phospho-acceptor) domain (HisKA)

(480-544)

LuxQ, periplasmic (LuxQ-periplasm)

(41-277)

Response regulator receiver domain (Response_reg)

(732-842)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxQ Vibrio cholerae strain A1552

99.533

100

0.995

Multiple sequence alignment