Detailed information NTG1146675

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VCBK1071_RS11440
• Genome accession: NZ_LT897797
• Coordinates: 2474567..2475574 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae isolate Vibrio cholerae str. BC1071
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2469567..2480574

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCBK1071_RS11430 (VCBK1071_02244)	cysM	2470730..2471617 (+)	888	WP_101411053.1	cysteine synthase CysM	-
VCBK1071_RS11435 (VCBK1071_02245)	mutS	2471886..2474474 (+)	2589	WP_101411359.1	DNA mismatch repair protein MutS	-
VCBK1071_RS11440 (VCBK1071_02246)	rpoS	2474567..2475574 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
VCBK1071_RS11445 (VCBK1071_02247)	nlpD	2475648..2476583 (-)	936	WP_101411055.1	murein hydrolase activator NlpD	-
VCBK1071_RS11450 (VCBK1071_02248)	-	2476583..2477209 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VCBK1071_RS11455 (VCBK1071_02249)	surE	2477202..2477954 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
VCBK1071_RS11460 (VCBK1071_02250)	truD	2477956..2479041 (-)	1086	WP_101411057.1	tRNA pseudouridine(13) synthase TruD	-
VCBK1071_RS11465 (VCBK1071_02251)	ispF	2479071..2479547 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VCBK1071_RS11470 (VCBK1071_02252)	ispD	2479544..2480242 (-)	699	WP_001061965.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VCBK1071_RS11475 (VCBK1071_02253)	ftsB	2480239..2480523 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=1146675 VCBK1071_RS11440 WP_000116735.1 2474567..2475574(-) (rpoS) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=1146675 VCBK1071_RS11440 WP_000116735.1 2474567..2475574(-) (rpoS) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTGACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAATGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997