Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VCBK1071_RS11300 Genome accession   NZ_LT897797
Coordinates   2448082..2448600 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae isolate Vibrio cholerae str. BC1071     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2443082..2453600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCBK1071_RS11275 (VCBK1071_02212) rimM 2443191..2443745 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  VCBK1071_RS11280 (VCBK1071_02213) rpsP 2443773..2444021 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  VCBK1071_RS11285 (VCBK1071_02214) ffh 2444257..2445642 (-) 1386 WP_000462715.1 signal recognition particle protein -
  VCBK1071_RS11290 (VCBK1071_02216) - 2445855..2446649 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  VCBK1071_RS11295 (VCBK1071_02217) - 2446732..2448012 (+) 1281 WP_101411041.1 HlyC/CorC family transporter -
  VCBK1071_RS11300 (VCBK1071_02218) luxS 2448082..2448600 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  VCBK1071_RS11305 (VCBK1071_02219) gshA 2448778..2450349 (-) 1572 WP_095481247.1 glutamate--cysteine ligase -
  VCBK1071_RS11310 (VCBK1071_02220) - 2450461..2453316 (-) 2856 WP_172440112.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=1146672 VCBK1071_RS11300 WP_001130227.1 2448082..2448600(-) (luxS) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1146672 VCBK1071_RS11300 WP_001130227.1 2448082..2448600(-) (luxS) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment