Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VCBK1071_RS07970 Genome accession   NZ_LT897797
Coordinates   1729968..1731392 (+) Length   474 a.a.
NCBI ID   WP_095464589.1    Uniprot ID   -
Organism   Vibrio cholerae isolate Vibrio cholerae str. BC1071     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1724968..1736392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCBK1071_RS07945 (VCBK1071_01554) - 1725237..1726022 (-) 786 WP_095471982.1 adenosylcobinamide-GDP ribazoletransferase -
  VCBK1071_RS07950 (VCBK1071_01555) cobT 1726022..1727047 (-) 1026 WP_032478855.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  VCBK1071_RS07960 (VCBK1071_01556) msrB 1727659..1728105 (-) 447 WP_095471986.1 peptide-methionine (R)-S-oxide reductase MsrB -
  VCBK1071_RS07965 (VCBK1071_01557) - 1728451..1729824 (+) 1374 WP_000117953.1 L-cystine transporter -
  VCBK1071_RS07970 (VCBK1071_01558) sbcB 1729968..1731392 (+) 1425 WP_095464589.1 exodeoxyribonuclease I Machinery gene
  VCBK1071_RS07975 (VCBK1071_01559) - 1731424..1731798 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  VCBK1071_RS07980 (VCBK1071_01560) - 1731789..1732463 (+) 675 WP_000266239.1 LrgB family protein -
  VCBK1071_RS07985 (VCBK1071_01561) cdd 1732633..1733520 (+) 888 WP_001245907.1 cytidine deaminase -
  VCBK1071_RS07990 (VCBK1071_01562) - 1733679..1734554 (+) 876 WP_000462872.1 AEC family transporter -
  VCBK1071_RS07995 (VCBK1071_01563) purT 1734708..1735883 (+) 1176 WP_001959616.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54568.98 Da        Isoelectric Point: 5.9828

>NTDB_id=1146664 VCBK1071_RS07970 WP_095464589.1 1729968..1731392(+) (sbcB) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPEDLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1146664 VCBK1071_RS07970 WP_095464589.1 1729968..1731392(+) (sbcB) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCATCAACCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTCGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGTTTTTTCTCCCCAG
CCGATCGTGCGGCAATGGAGATCATCCGCACCACTGCACCGGAGGATCTGGGCAGCTTAGCGATCCGGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

99.578

100

0.996

Multiple sequence alignment