Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   VCBK1071_RS04285 Genome accession   NZ_LT897797
Coordinates   884780..888124 (+) Length   1114 a.a.
NCBI ID   WP_172440051.1    Uniprot ID   -
Organism   Vibrio cholerae isolate Vibrio cholerae str. BC1071     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 879780..893124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCBK1071_RS04260 (VCBK1071_00830) sucC 879901..881067 (+) 1167 WP_001048578.1 ADP-forming succinate--CoA ligase subunit beta -
  VCBK1071_RS04265 (VCBK1071_00831) sucD 881067..881939 (+) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  VCBK1071_RS04270 (VCBK1071_00832) znuB 882046..882828 (-) 783 WP_000571527.1 zinc ABC transporter permease subunit ZnuB -
  VCBK1071_RS04275 (VCBK1071_00833) znuC 882821..883609 (-) 789 WP_000996146.1 zinc ABC transporter ATP-binding protein ZnuC -
  VCBK1071_RS04280 (VCBK1071_00834) znuA 883693..884577 (+) 885 WP_002053233.1 zinc ABC transporter substrate-binding protein ZnuA -
  VCBK1071_RS04285 (VCBK1071_00835) tfoS 884780..888124 (+) 3345 WP_172440051.1 AraC family transcriptional regulator Regulator
  VCBK1071_RS04290 (VCBK1071_00837) - 888896..889126 (+) 231 WP_000777870.1 FeoA family protein -
  VCBK1071_RS04295 (VCBK1071_00838) feoB 889123..891399 (+) 2277 WP_046121440.1 Fe(2+) transporter permease subunit FeoB -
  VCBK1071_RS04300 (VCBK1071_00839) - 891396..891626 (+) 231 WP_000602537.1 FeoC-like transcriptional regulator -
  VCBK1071_RS04305 (VCBK1071_00840) - 891882..892310 (-) 429 WP_000929906.1 HIT family protein -

Sequence

Protein


Download         Length: 1114 a.a.        Molecular weight: 126373.93 Da        Isoelectric Point: 6.7962

>NTDB_id=1146657 VCBK1071_RS04285 WP_172440051.1 884780..888124(+) (tfoS) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MFRTLLYGCLLNILIPSLVLALDKSMSIFYPLPIQEQGKVIVAQNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLP
QLSSHIVYANSAFWAFEQHELFRTYPGGERELMLSLTPGTQIIQMGASNGMIWMVDGENFYSYESRSGRVESLSLHELYQ
LNSASKVVINDAQFLVSKWALATNVGVYLSDEQGFAHVKNSGKHFIQKLYFSHKRRELLVGSKRGALVIDIENKRPPLDR
IGSSHVLSIAETEKEYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQ
FTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQGLYNFNFSDELRKHLIYPGKVNDFVIAQEHLWIATEKGLVRYNL
IRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLLAAVKDGIVIGTE
HGAYSLLEKQIRFDFSSHRYGEILQVAEDSSGHIWLVGSYGVFQWRKDQPEAVTVELIEENIQPLCIAESKQGMWLISTK
GISYYRNQELTKHFGAPYGLISNEFLSASCAVGEEQDTSSLIIGSHFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKL
LGYRMSEPLKIAYGDSISFQFGALPSSRSQSLEYKLNDEQQWQRFDWALLNFDQLLPGKYRLKVRSANPTQRYRTEALFD
FEVLQPWYMTSIALVGYVLSVLGLLALALWWRTRMILAANRKLKAQVELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILG
NVLDNIDASLRHLSSYAKVRAWSEFEAPFNKVKQELAQLHFMHRGDEDESKYHDLHLLIESALKSWQEEYSKALIKLTYS
GEPRFVEVRQFNLDVLFNAVLTDAIKRLYKHQELTIQLEVRNAQAVIVFSDFGAPIQNIDKTMVTLSGSSYPLEELVTRS
GGVLHVLALKERNVIELAWPLATLPELETIHKPEEGEQAAKVGIDEVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVS
ERSLQRRFKAATGKTFKESLNEVRLEKACQSLLSGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQEN

Nucleotide


Download         Length: 3345 bp        

>NTDB_id=1146657 VCBK1071_RS04285 WP_172440051.1 884780..888124(+) (tfoS) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
GTGTTTCGCACATTGTTGTATGGCTGCTTGCTCAATATCCTGATCCCATCCTTGGTATTGGCATTAGATAAATCTATGTC
TATTTTCTATCCTTTGCCCATTCAAGAGCAGGGGAAGGTTATTGTTGCGCAAAATCTCTACCTCGGTAGTGATGGGGGGA
TTTGGGTACATGATGTTCATGGCAAAGTGATGTACTTTGATGGACAAAACGTCTTGCCTCGTCGTGGTTCTGTTCTGCCG
CAGTTGTCCAGTCATATTGTTTATGCGAACAGTGCATTTTGGGCTTTTGAGCAACACGAGTTGTTCAGAACTTATCCCGG
GGGAGAAAGAGAGCTGATGTTGAGCTTAACTCCGGGAACGCAGATTATTCAGATGGGGGCCTCAAATGGCATGATCTGGA
TGGTTGATGGGGAAAACTTCTATAGTTATGAGAGCCGAAGTGGCCGCGTCGAATCCCTCTCGTTACATGAACTTTATCAG
CTCAATAGTGCCAGCAAGGTCGTGATTAACGATGCGCAGTTTTTAGTCTCGAAATGGGCTTTAGCGACTAATGTTGGGGT
GTATTTATCTGATGAACAAGGTTTTGCCCATGTAAAAAATTCTGGCAAGCACTTTATCCAAAAGCTCTATTTTTCCCATA
AGCGGCGAGAGCTGTTAGTTGGGTCTAAACGTGGCGCGTTAGTCATTGATATTGAAAATAAACGTCCACCACTGGATAGA
ATTGGTTCCTCCCATGTCCTCTCTATTGCGGAAACCGAGAAAGAGTACTGGATCGGTACAGAAGATGGGCTCTTTGTTTA
CTCTTTTATCACCGGGAAAATCGTGCAACTTGAGAGTAACAACCAAGATGGCTATGCCTTACTGGGCAAGAAAATCTACG
CCATGGTGAATGACTTTCAAGGTGGGATGTGGATAGGAACTGACAAGGGGATTTTTTATTACTCCCTATTTGGTCAGCAG
TTTACTCGGTATCCGGCGCAAGCATTATCTAACGACGGAAGTAAAACACCGATCGGTAAAATAGCCGCTCTTAACTCGGA
TGGAGACTATCTGGCGATAACCGCACAAGGCCTGTATAACTTTAATTTTTCAGATGAGCTACGTAAGCATCTTATCTATC
CAGGCAAAGTAAATGATTTTGTGATTGCCCAAGAGCATCTCTGGATCGCGACAGAGAAAGGTCTGGTTCGTTACAATCTC
ATTCGTCGTAGTATTGATACGCCCAATTTACCGCTCCCTTTGCTACAAACGGCTATTCAGCATCTGAGCTTAGATAGTGA
CGGTAACTTATGGGGGACAAGTGATTACCAAATATGGTCATACTCACTCTCTGAAAAAAATTATCGAGATTATGGTTCTG
AATGGATGGTGAAGGCTTTTTCTCCATCACGGATCACTCTGCTTGCCGCAGTAAAAGACGGCATAGTGATTGGGACAGAA
CATGGCGCTTATTCCCTGCTTGAAAAACAGATCCGCTTTGATTTTTCGAGTCATCGCTATGGTGAGATTTTACAAGTTGC
TGAAGATTCTTCAGGCCACATTTGGCTTGTTGGCTCTTATGGGGTTTTTCAGTGGCGTAAAGATCAACCCGAAGCTGTCA
CTGTCGAGTTAATTGAAGAGAATATACAGCCTTTGTGTATTGCTGAGTCTAAGCAGGGGATGTGGCTTATCTCCACCAAA
GGGATCAGTTATTACCGTAATCAAGAGCTCACTAAGCATTTTGGGGCTCCTTATGGACTGATCAGTAATGAGTTCTTGTC
TGCATCGTGTGCGGTGGGTGAGGAGCAAGATACCTCATCGTTGATCATAGGATCGCATTTTGGTGTAGTGAAAACCAATA
CAGAAGAATTAGCGGTGTCTAATTTGCCCAATATTCAGGTGACGTTTAGCCAAGTCAGCGTAAATCATACGACCAAGCTT
TTGGGGTATCGTATGTCCGAGCCACTGAAAATTGCTTATGGTGATTCGATCAGCTTTCAGTTTGGCGCTTTACCCTCTTC
ACGCAGCCAATCTTTAGAATACAAACTCAACGATGAACAGCAGTGGCAGCGCTTTGATTGGGCGCTGCTCAATTTTGATC
AACTTTTACCTGGTAAGTATCGTTTGAAAGTCCGTAGCGCTAATCCGACACAGCGATACCGAACTGAGGCCCTGTTTGAT
TTTGAAGTCTTACAGCCTTGGTATATGACCTCCATCGCGCTTGTCGGATATGTGCTGAGCGTGTTGGGGCTATTAGCACT
CGCTTTATGGTGGCGAACAAGAATGATATTGGCAGCTAACCGCAAACTCAAAGCGCAAGTGGAGCTCAAAACCAGTCAGT
TACGTCATCAAAGTAAAATTGTACTGAGCAACAACCACCAACTTCGAAAGCAACTGCAGCTCCACCATACAATTCTTGGT
AACGTTTTAGACAATATTGATGCTTCATTGCGGCACTTATCTTCCTACGCCAAAGTACGAGCATGGAGTGAATTTGAAGC
ACCGTTCAACAAGGTGAAGCAAGAGTTGGCTCAACTGCATTTTATGCATCGCGGCGATGAGGATGAAAGCAAATATCATG
ATTTGCATCTTTTGATTGAGTCTGCATTGAAGAGTTGGCAGGAAGAGTACAGTAAAGCCTTGATTAAGCTAACTTACAGC
GGTGAGCCTCGCTTTGTGGAAGTCCGACAATTCAACCTTGATGTGTTATTTAATGCTGTATTAACGGATGCGATCAAACG
TTTGTATAAGCATCAAGAATTAACCATACAACTTGAAGTGAGAAATGCGCAGGCGGTTATCGTGTTTTCTGATTTTGGTG
CCCCAATCCAAAACATAGACAAAACCATGGTGACGTTATCTGGTAGTAGTTATCCGCTTGAAGAGTTAGTCACTCGTAGT
GGTGGTGTATTGCATGTGCTCGCGTTGAAAGAGCGTAATGTGATTGAGTTAGCTTGGCCATTGGCAACCTTACCCGAGTT
AGAAACCATTCATAAACCAGAAGAAGGGGAACAGGCGGCTAAGGTTGGGATCGATGAGGTGGAGAAAGAGTGGCTAAGCA
AAGTCGAGAAACTGATTGAGCTGCATTATAGCGACCCCAATTTCACCACATCCACTGCAGCGCAGGCGCTTTATGTCTCT
GAACGCAGTTTACAGCGTCGCTTTAAAGCCGCGACAGGAAAAACCTTCAAAGAGTCGTTAAATGAGGTTCGCTTAGAAAA
AGCGTGTCAAAGCTTATTGAGTGGGGCGAAAATCGCACAAGTTGCCTTTGATTGCGGATTTAATGATCCCTCTTATTTCA
GTCAGCGTTTCAAACATCATTTTGGATTATCACCAAGCCAATTCATCGAAGATCAAGAAAACTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1034-1109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

99.551

100

0.996

Multiple sequence alignment