Detailed information NTG1146646

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VCBK1071_RS01335
• Genome accession: NZ_LT897797
• Coordinates: 280518..281525 (+)
• Length: 335 a.a.
• NCBI ID: WP_032473898.1
• Uniprot ID: -
• Organism: Vibrio cholerae isolate Vibrio cholerae str. BC1071
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 275518..286525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCBK1071_RS01315 (VCBK1071_00253)	metJ	275522..275839 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
VCBK1071_RS01320 (VCBK1071_00254)	-	275950..277227 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
VCBK1071_RS01325 (VCBK1071_00255)	rpmE	277535..277753 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
VCBK1071_RS01330 (VCBK1071_00256)	priA	278008..280212 (+)	2205	WP_001247856.1	primosomal protein N'	-
VCBK1071_RS01335 (VCBK1071_00257)	cytR	280518..281525 (+)	1008	WP_032473898.1	DNA-binding transcriptional regulator CytR	Regulator
VCBK1071_RS01340 (VCBK1071_00258)	-	281697..282248 (+)	552	WP_001891621.1	SPOR domain-containing protein	-
VCBK1071_RS01345 (VCBK1071_00259)	hslV	282385..282942 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
VCBK1071_RS01350 (VCBK1071_00260)	hslU	283008..284339 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
VCBK1071_RS01355 (VCBK1071_00261)	-	284443..285360 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VCBK1071_RS01360 (VCBK1071_00262)	rraA	285435..285950 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37004.57 Da
• Isoelectric Point: 7.0759

>NTDB_id=1146646 VCBK1071_RS01335 WP_032473898.1 280518..281525(+) (cytR) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPSA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=1146646 VCBK1071_RS01335 WP_032473898.1 280518..281525(+) (cytR) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACAGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGTCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGTCCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGCGGACATGATGTGCGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	99.701	100	0.997
cytR	Vibrio parahaemolyticus RIMD 2210633	90.419	99.701	0.901