Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EC1094V2_RS16825 Genome accession   NZ_LT883142
Coordinates   2925072..2925701 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate 6666666.257727.embl     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2920072..2930701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC1094V2_RS16810 (EC1094V2_2868) helD 2920314..2922368 (-) 2055 WP_096321235.1 DNA helicase IV -
  EC1094V2_RS16815 (EC1094V2_2869) yccF 2922491..2922937 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EC1094V2_RS16820 (EC1094V2_2870) yccS 2922947..2925109 (+) 2163 WP_000875061.1 YccS family putative transporter -
  EC1094V2_RS16825 (EC1094V2_2871) sxy/tfoX 2925072..2925701 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EC1094V2_RS16830 (EC1094V2_2872) sulA 2925920..2926429 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EC1094V2_RS16840 (EC1094V2_2873) ompA 2926786..2927826 (+) 1041 WP_000750416.1 porin OmpA -
  EC1094V2_RS16845 (EC1094V2_2874) matP 2927902..2928354 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EC1094V2_RS16850 (EC1094V2_2875) ycbZ 2928540..2930300 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1146598 EC1094V2_RS16825 WP_000839153.1 2925072..2925701(-) (sxy/tfoX) [Escherichia coli isolate 6666666.257727.embl]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1146598 EC1094V2_RS16825 WP_000839153.1 2925072..2925701(-) (sxy/tfoX) [Escherichia coli isolate 6666666.257727.embl]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment