Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LZ3411_RS04835 Genome accession   NZ_LT854705
Coordinates   1044489..1046300 (+) Length   603 a.a.
NCBI ID   WP_087741825.1    Uniprot ID   -
Organism   Levilactobacillus zymae strain ACA-DC 3411     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039489..1051300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ3411_RS04810 (LZ3411_0926) - 1039714..1040448 (+) 735 WP_087741821.1 ABC transporter ATP-binding protein -
  LZ3411_RS04815 (LZ3411_0927) - 1040445..1041671 (+) 1227 WP_087741822.1 ABC transporter permease -
  LZ3411_RS04820 (LZ3411_0928) - 1041733..1042524 (+) 792 WP_057730140.1 phosphotransferase family protein -
  LZ3411_RS04825 (LZ3411_0929) trmB 1042588..1043235 (+) 648 WP_087741823.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  LZ3411_RS04830 (LZ3411_0930) - 1043338..1044408 (+) 1071 WP_087741824.1 competence protein CoiA -
  LZ3411_RS04835 (LZ3411_0931) pepF 1044489..1046300 (+) 1812 WP_087741825.1 oligoendopeptidase F Regulator
  LZ3411_RS04840 (LZ3411_0932) - 1046358..1047218 (-) 861 WP_087741826.1 DegV family protein -
  LZ3411_RS04845 (LZ3411_0933) - 1047347..1047991 (-) 645 WP_057730131.1 DsbA family protein -
  LZ3411_RS04850 (LZ3411_0934) - 1048316..1048969 (+) 654 WP_057730129.1 GTP pyrophosphokinase family protein -
  LZ3411_RS04855 (LZ3411_0935) - 1048972..1049775 (+) 804 WP_057730127.1 NAD kinase -
  LZ3411_RS04860 (LZ3411_0936) - 1049772..1050671 (+) 900 WP_087741827.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67696.74 Da        Isoelectric Point: 4.9515

>NTDB_id=1146479 LZ3411_RS04835 WP_087741825.1 1044489..1046300(+) (pepF) [Levilactobacillus zymae strain ACA-DC 3411]
MRQIPERSAVPEALTWDLTPIYADDAAFTQAIAEIKQQAQTVAQLKGHLATSGAELYRVTTAVFALNRQLERAYVYASLK
NDQDTGNPQYQDFADQTSALVATVATATAWFEPEVLALSADQLQALIAAEPKLAEFQHFFDVLGQQRAHTLSVPEERLLA
GASDIFEASEKTYGVLDNADLQFPVVQDEDGNDVKLSQGLYGVLLESTTPKVREQAFKALYSVYQQFRHTFASTLASEVK
THNFTAQVRHYGSAREAAMSANQIPAVVYETLVSTVNDHLDLLHQYVALRKDLLGLPELHMYDLYTPITGEPSLKYTYDQ
AKAEALKALAVLGPDYVANVQRMFDGRAIDVVENRGKRSGAYSGGMYDTKPYILLNWQDSLEGLFTLVHEMGHSIHSHYT
RHNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQAAAGKSLT
ADFMSDFYGKLNQRYYGDAVISDPQIADEWARIPHFYYDYYVYQYATGFAAATTLSQRILSGDPAKRDAYLGYLKAGSSA
LPLDVMRHAGVDMTQPDYLETAFQTFADRLKEFGDLARQLKQN

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1146479 LZ3411_RS04835 WP_087741825.1 1044489..1046300(+) (pepF) [Levilactobacillus zymae strain ACA-DC 3411]
ATGCGACAAATTCCAGAACGCTCAGCGGTGCCCGAAGCCTTAACGTGGGACCTGACGCCCATCTATGCCGATGATGCGGC
GTTTACTCAGGCCATTGCCGAGATCAAGCAGCAGGCGCAAACGGTCGCCCAGTTGAAGGGGCATTTAGCGACCAGTGGGG
CCGAGTTATACCGGGTCACTACGGCCGTTTTTGCGCTGAACCGGCAACTCGAACGGGCCTACGTGTACGCGTCTCTCAAA
AATGACCAGGATACCGGGAACCCCCAGTACCAAGACTTTGCCGACCAGACCAGTGCCTTGGTGGCCACGGTGGCCACGGC
GACCGCGTGGTTTGAACCCGAGGTTCTGGCCCTTTCCGCCGACCAACTGCAGGCGCTGATCGCGGCCGAACCGAAATTAG
CCGAATTCCAACACTTCTTTGACGTGTTGGGCCAACAGCGTGCCCACACCTTGTCGGTCCCCGAAGAACGGTTGTTGGCC
GGGGCCAGTGACATCTTCGAGGCGTCGGAGAAGACCTACGGCGTGCTCGACAACGCCGATTTGCAATTCCCCGTGGTGCA
AGATGAAGACGGCAACGACGTGAAGCTTTCGCAGGGCCTGTACGGCGTCTTACTAGAGTCGACGACGCCGAAAGTTCGTG
AGCAGGCGTTTAAGGCCCTCTACAGCGTTTATCAACAATTCCGGCACACCTTTGCCTCCACGTTAGCTAGCGAGGTCAAA
ACGCATAATTTCACGGCCCAGGTGCGGCATTACGGGAGCGCCAGAGAAGCCGCGATGAGTGCCAACCAGATTCCGGCCGT
GGTCTATGAGACGCTGGTCAGTACCGTCAATGATCACTTGGACCTCCTACACCAATACGTGGCGTTGCGCAAGGACTTAT
TGGGATTGCCCGAGTTACACATGTACGACCTGTATACGCCGATCACCGGGGAGCCGAGTCTGAAGTACACCTACGACCAG
GCCAAGGCGGAGGCGTTAAAGGCCCTGGCCGTATTGGGGCCCGATTACGTGGCTAACGTGCAACGGATGTTTGATGGCCG
CGCCATTGACGTGGTGGAAAACCGGGGCAAGCGTTCCGGGGCCTATTCCGGGGGGATGTACGATACTAAGCCGTACATTT
TATTGAACTGGCAAGATAGCCTGGAAGGGTTGTTCACGCTAGTCCACGAAATGGGGCACAGTATTCACAGTCACTACACG
CGGCATAACCAGCCCTATCAGTACGGGGACTACTCGATCTTCGTGGCCGAAATTGCGTCGACGACCAACGAAAATCTGTT
GACCGATTACCTGTTGAAGACCCAAACGGATCCCAAGGTTCGCGCCTACGTTCTGAACCATTACCTGGACGGGTTCAAGG
GGACGGTCTACCGGCAGACCCAATTTGCCGAATTTGAAGACTACATCCACCAACAAGCCGCGGCGGGAAAGTCGTTGACC
GCCGACTTCATGAGCGACTTTTACGGCAAGCTCAATCAGCGCTACTATGGCGACGCGGTGATCTCGGATCCCCAGATTGC
CGACGAATGGGCCCGGATTCCACACTTCTATTACGACTATTACGTTTACCAGTACGCCACCGGCTTTGCGGCGGCCACCA
CGTTATCCCAGCGGATCTTGAGTGGGGACCCGGCCAAGCGCGACGCCTACCTGGGTTACCTGAAGGCCGGCAGTTCGGCC
TTACCGTTGGACGTGATGCGGCACGCTGGCGTGGATATGACCCAACCAGATTACCTGGAAACGGCCTTTCAAACCTTTGC
CGACCGGTTAAAGGAATTCGGCGACTTAGCCCGACAGCTTAAACAAAACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-584)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.096

98.342

0.502

Multiple sequence alignment