Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LZ3411_RS03075 Genome accession   NZ_LT854705
Coordinates   681973..683346 (+) Length   457 a.a.
NCBI ID   WP_057732403.1    Uniprot ID   A0A1Y6JX22
Organism   Levilactobacillus zymae strain ACA-DC 3411     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 676973..688346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ3411_RS03050 (LZ3411_0597) - 677625..678959 (-) 1335 WP_057733600.1 aminopeptidase C -
  LZ3411_RS03055 (LZ3411_0598) - 679175..680083 (+) 909 WP_087741637.1 hypothetical protein -
  LZ3411_RS03060 (LZ3411_0599) rpiA 680127..680813 (-) 687 WP_057732391.1 ribose-5-phosphate isomerase RpiA -
  LZ3411_RS03065 (LZ3411_0600) - 680821..681156 (-) 336 WP_087741638.1 acetyltransferase -
  LZ3411_RS03070 (LZ3411_0601) - 681350..681889 (+) 540 WP_087741639.1 hypothetical protein -
  LZ3411_RS03075 (LZ3411_0602) radA 681973..683346 (+) 1374 WP_057732403.1 DNA repair protein RadA Machinery gene
  LZ3411_RS03080 (LZ3411_0603) - 683378..684547 (+) 1170 WP_057732386.1 PIN/TRAM domain-containing protein -
  LZ3411_RS03085 (LZ3411_0604) gltX 684813..686303 (+) 1491 WP_057732384.1 glutamate--tRNA ligase -
  LZ3411_RS13470 - 686558..686686 (+) 129 WP_269457555.1 hypothetical protein -
  LZ3411_RS03090 (LZ3411_0605) cysS 686836..688251 (+) 1416 WP_087741640.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49570.14 Da        Isoelectric Point: 6.9034

>NTDB_id=1146473 LZ3411_RS03075 WP_057732403.1 681973..683346(+) (radA) [Levilactobacillus zymae strain ACA-DC 3411]
MAKVKTKFVCQNCDYSSPRYLGRCPNCGEWNTMVEETVTPEVKPQSTRVTPAGEHTRPQLMNEIKHTTETRVKTQMEELN
RVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSATGGKVLYVSGEESASQIKMRADRLVVNAEHLYLYPETDMVSIRA
NIEEMHPDYVIIDSVQTMQAPGIESAIGSVSQIRAVTGELMQIAKTNGITIFVVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMKEGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALITPSVFG
NAQRTASGLDRNRVSLLMAVLEKRANLMLQNQDAFLKAAGGVKLDEPAIDLAIALSIASSYKDTATAPTDCFVGEVGLTG
EIRRVSRIEQRVAEAKKLGFQRIFVPKNNLQGWTPPAGIDVIGVSTLRQALKLALGV

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1146473 LZ3411_RS03075 WP_057732403.1 681973..683346(+) (radA) [Levilactobacillus zymae strain ACA-DC 3411]
GTGGCCAAGGTTAAAACGAAATTTGTGTGTCAAAATTGTGATTACAGTTCCCCCCGGTATTTGGGCCGTTGCCCGAACTG
TGGGGAATGGAACACCATGGTCGAGGAGACCGTCACGCCGGAAGTTAAACCGCAATCGACGCGGGTCACGCCGGCCGGTG
AACACACCCGACCGCAGTTGATGAATGAAATCAAGCACACCACCGAAACGCGGGTCAAAACGCAAATGGAAGAACTCAAC
CGGGTCTTAGGGGGCGGCATCGTGCCCGGGTCCTTGATCCTGATTGGGGGCGATCCGGGAATCGGGAAATCGACGTTGCT
CCTGCAGGTGTCGGGCCAACTCAGCGCGACCGGGGGCAAGGTCTTGTACGTGTCCGGTGAAGAAAGCGCCAGTCAAATCA
AGATGCGGGCCGACCGGCTGGTGGTCAACGCCGAACACCTTTACCTGTACCCGGAGACCGACATGGTCAGCATTCGGGCC
AACATCGAAGAGATGCACCCGGACTACGTGATCATCGATTCCGTGCAGACCATGCAGGCGCCGGGCATCGAATCAGCCAT
TGGGTCGGTTTCTCAGATTCGCGCGGTCACCGGTGAATTGATGCAGATTGCTAAGACCAACGGCATCACCATCTTTGTGG
TGGGTCACGTGACCAAGGGCGGTGCCATCGCCGGTCCGAAGATTCTGGAACACATGGTGGATACGGTCCTGTATTTTGAA
GGTGACCTACACCACACTTACCGGATTTTGCGGGCGGTCAAGAACCGGTTCGGGTCGACCAACGAATTGGGAATCTTCGA
AATGAAGGAAGGCGGCCTGTATGAGGTGGCTAACCCGTCGGAGATTTTCCTGGAAGAACGCCTGAAGGACGCGACTGGCT
CGGCCATCGTGGTGTCGATGGAGGGGACCCGACCGATTCTGGTCGAAGTCCAAGCTCTGATCACGCCATCGGTCTTCGGC
AACGCCCAACGAACCGCGAGCGGCTTAGACCGTAACCGGGTCTCGTTATTGATGGCGGTGCTGGAGAAGCGGGCCAACCT
GATGCTGCAAAATCAGGACGCTTTCTTGAAGGCCGCCGGGGGCGTTAAGCTAGACGAACCAGCCATTGACTTGGCGATTG
CGTTGAGTATCGCGTCGAGCTACAAGGACACGGCAACGGCGCCCACGGACTGTTTCGTGGGGGAAGTCGGACTGACCGGG
GAAATTCGGCGCGTGAGTCGGATCGAACAACGGGTAGCTGAAGCCAAGAAACTGGGTTTCCAACGAATCTTCGTGCCTAA
GAATAACCTGCAAGGCTGGACGCCGCCGGCCGGCATCGACGTTATCGGGGTGTCGACCTTGCGGCAAGCATTGAAACTCG
CACTGGGCGTCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-221)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6JX22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

68.805

98.906

0.681
  radA Streptococcus mitis NCTC 12261

68.584

98.906

0.678
  radA Streptococcus pneumoniae Rx1

68.584

98.906

0.678
  radA Streptococcus pneumoniae D39

68.584

98.906

0.678
  radA Streptococcus pneumoniae R6

68.584

98.906

0.678
  radA Streptococcus pneumoniae TIGR4

68.584

98.906

0.678
  radA Bacillus subtilis subsp. subtilis str. 168

64.859

100

0.654

Multiple sequence alignment