Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NBC2815_RS15745 Genome accession   NZ_LT853880
Coordinates   3395236..3395637 (-) Length   133 a.a.
NCBI ID   WP_002812043.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain NBC2815     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3390236..3400637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBC2815_RS15730 (NBC2815_03143) - 3392250..3394286 (-) 2037 WP_088061914.1 methyl-accepting chemotaxis protein -
  NBC2815_RS15735 (NBC2815_03144) - 3394326..3394856 (-) 531 WP_002812041.1 chemotaxis protein CheW -
  NBC2815_RS15740 (NBC2815_03145) - 3394856..3395218 (-) 363 WP_002812042.1 response regulator -
  NBC2815_RS15745 (NBC2815_03146) pilG 3395236..3395637 (-) 402 WP_002812043.1 twitching motility response regulator PilG Regulator
  NBC2815_RS15750 (NBC2815_03147) gshB 3395873..3396823 (+) 951 WP_002812044.1 glutathione synthase -
  NBC2815_RS15755 (NBC2815_03148) - 3396820..3397686 (+) 867 WP_002812045.1 energy transducer TonB -
  NBC2815_RS15760 (NBC2815_03149) tsaB 3397798..3398517 (-) 720 WP_002812046.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14816.27 Da        Isoelectric Point: 8.4921

>NTDB_id=1146426 NBC2815_RS15745 WP_002812043.1 3395236..3395637(-) (pilG) [Xanthomonas fragariae strain NBC2815]
MNENIAAGKELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADRHPQIIFVDIMMPRLDGYQTCALIK
GNQVFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSVIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1146426 NBC2815_RS15745 WP_002812043.1 3395236..3395637(-) (pilG) [Xanthomonas fragariae strain NBC2815]
ATGAATGAAAACATTGCTGCGGGTAAGGAACTCGCAGGACTGAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTCAAGCGAGAAGGATGTGAAGTAGTGACAGCGACCGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCGACACCCTCAGATCATTTTTGTCGACATTATGATGCCGCGCTTGGATGGGTACCAGACCTGCGCGTTGATCAAG
GGCAATCAGGTCTTTAAGTCGACGCCGGTGATCATGTTGTCTTCAAAGGATGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACCCGTGAAGAACTACTGAGCGTGATTCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.38

90.977

0.677

Multiple sequence alignment