Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB4   Type   Machinery gene
Locus tag   CS885_RS05455 Genome accession   NZ_LT838273
Coordinates   1103553..1105919 (+) Length   788 a.a.
NCBI ID   WP_089086466.1    Uniprot ID   A0A238GTG4
Organism   Helicobacter pylori isolate HE93/10_v1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1098553..1110919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS885_RS05420 groES 1098571..1098927 (-) 357 WP_000671927.1 co-chaperone GroES -
  CS885_RS05430 dnaG 1099214..1100893 (+) 1680 WP_089086464.1 DNA primase -
  CS885_RS05435 - 1100890..1101942 (+) 1053 WP_089086465.1 MnmA/TRMU family protein -
  CS885_RS05440 - 1102035..1102862 (+) 828 WP_001154942.1 DUF5718 family protein -
  CS885_RS05445 comB2 1103007..1103288 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  CS885_RS05450 comB3 1103288..1103551 (+) 264 WP_000584948.1 hypothetical protein Machinery gene
  CS885_RS05455 comB4 1103553..1105919 (+) 2367 WP_089086466.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CS885_RS05465 - 1106224..1107564 (+) 1341 WP_001876830.1 COG3014 family protein -
  CS885_RS05470 cheV1 1107671..1108636 (+) 966 WP_000785482.1 chemotaxis protein CheV1 -
  CS885_RS05475 nspC 1108633..1109850 (+) 1218 WP_000760798.1 carboxynorspermidine decarboxylase -
  CS885_RS05480 lpxE 1109924..1110457 (-) 534 WP_231628461.1 lipid A 1-phosphatase LpxE -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 90214.54 Da        Isoelectric Point: 7.9708

>NTDB_id=1146401 CS885_RS05455 WP_089086466.1 1103553..1105919(+) (comB4) [Helicobacter pylori isolate HE93/10_v1]
MLEKFLGAIKQKVSNYFLGALPKSYSMSEENNILGLYDEHFLLTKNENLVGILRLEGVSYTHLSTEQLQDLFTERQMALD
SLEKVVARLVVKRRKIDYQQNIQSDSQYLQAILNQFENKEVYENQYFLVLESTHSLHGVLEHKKKSFMHANRENFKDILS
YKAHFLQETLKSLEIQLKNYAPKLLSSKEVLNFYAEYINGFDLPLKPPLVGGYLSDSYIASSITFEKDYFIQESFNQKTY
NRLIGVKAYESERITSIAVGALLYQETPLDIIFSIEPMSAHKTLSFLKERAKFSMSNLVKNELLEYQELVKTKRLSMQKF
ALNVLIKAPSLEDLDAQTSLVLGLLFKENLVGVIETFGLKGGYFSFFPERIYLNHRLRFLTSKALACLMVFERQNLGFKA
NSWGNSPLSVFKNLDYSPFLFNFHNQEVSHNNAKEIARVNGHTLVIGATGSGKSTLISFLMMSALKYQNMRLLAFDRMQG
LYSFTEFFKGHYHDGQSFSINPFCLEPNLQNLEFLQSFFLSMFDLAPSRDKEALEDMNAISGAIKSLYETLYPKAFSLLD
FKETLKRTSSNQLGLSLEPYLNNPLFNALNDAFNSSAFLNVINLDAITQNPKDLGLLAYYLFYKILEESRKNDSGFLVFL
DEFKSYVENDLLNTKINALITQARKANGVVVLALQDIYQLSGVKNAHSFLSNMGTLILYPQKNARELKHNFNVPLSETEI
SFLENTPLYARQVLVKNLGNGSSNMIDVSLEGLGRYLKIFNSDSSHVNKVKALQKDYPTEWREKLLKS

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=1146401 CS885_RS05455 WP_089086466.1 1103553..1105919(+) (comB4) [Helicobacter pylori isolate HE93/10_v1]
ATGTTAGAAAAGTTTTTAGGCGCTATCAAGCAAAAAGTTTCAAATTATTTTTTAGGGGCTTTGCCTAAAAGCTATTCAAT
GAGTGAAGAAAACAACATTTTAGGCTTGTATGATGAGCATTTTTTACTCACTAAAAACGAAAACTTAGTGGGCATTCTCC
GTTTAGAGGGGGTGAGTTACACCCATTTAAGCACAGAGCAATTGCAAGATCTTTTCACCGAGCGTCAGATGGCGTTGGAT
TCTTTAGAAAAAGTCGTGGCGCGCTTGGTGGTTAAAAGGCGTAAAATTGATTATCAACAAAACATTCAATCTGACTCTCA
ATACTTGCAAGCGATCTTGAATCAGTTTGAAAATAAAGAAGTGTATGAGAATCAGTATTTTTTGGTTTTAGAAAGCACTC
ACTCTTTGCATGGGGTTTTAGAGCATAAGAAAAAATCTTTCATGCACGCTAATAGGGAAAATTTTAAGGATATTCTCTCT
TATAAAGCGCATTTTTTGCAAGAAACTTTAAAAAGCCTAGAAATCCAGCTCAAAAACTATGCCCCCAAACTCTTAAGCTC
TAAAGAGGTTTTGAATTTTTATGCAGAATATATTAATGGGTTTGATCTCCCCTTAAAGCCCCCCCTAGTAGGGGGGTATT
TGAGCGATAGCTATATCGCTAGTTCTATCACTTTTGAAAAAGATTATTTCATTCAAGAAAGCTTTAACCAAAAAACCTAC
AACCGCTTGATTGGCGTTAAGGCTTATGAGAGCGAAAGGATCACTTCTATAGCGGTGGGAGCGCTTTTATACCAAGAAAC
GCCTTTAGATATTATCTTTTCCATAGAGCCTATGAGCGCGCATAAAACGCTGAGTTTTTTAAAAGAGAGAGCCAAGTTTA
GCATGTCCAATCTCGTTAAAAACGAGCTGCTAGAATACCAGGAATTAGTCAAAACCAAACGCTTATCCATGCAAAAATTC
GCCCTAAATGTTCTTATCAAAGCCCCCAGTTTAGAGGATTTAGACGCTCAAACGAGCTTAGTTTTAGGGCTTTTATTTAA
AGAAAACTTAGTGGGCGTTATAGAAACTTTTGGCTTGAAAGGGGGGTATTTTTCCTTTTTCCCTGAACGCATTTATTTAA
ACCACCGCTTGCGTTTTTTGACCTCTAAAGCCCTAGCGTGTTTGATGGTGTTTGAAAGGCAAAATTTAGGTTTTAAGGCT
AATTCATGGGGGAATAGCCCTTTGAGCGTGTTTAAAAATTTGGATTATTCCCCTTTTTTATTCAATTTCCACAACCAAGA
AGTGAGCCATAATAACGCTAAAGAAATCGCCAGAGTGAATGGGCATACTTTAGTTATAGGGGCAACCGGAAGCGGTAAAA
GCACGCTGATTAGCTTTTTAATGATGAGCGCTTTGAAATACCAGAACATGCGCCTTTTAGCTTTTGATAGGATGCAAGGG
CTGTATTCTTTCACCGAATTTTTTAAAGGGCATTACCATGACGGCCAATCTTTTAGTATCAACCCCTTTTGTTTAGAGCC
TAATTTACAGAATTTAGAATTTTTGCAATCCTTCTTTTTGAGCATGTTTGATCTCGCCCCTTCAAGGGATAAAGAAGCCT
TAGAAGACATGAATGCGATTTCTGGCGCGATTAAGAGCCTTTATGAGACCTTATACCCTAAAGCCTTTAGTTTGCTAGAC
TTTAAAGAAACGCTTAAAAGAACCTCATCTAACCAATTGGGCTTGAGCTTGGAGCCGTATTTGAATAACCCCCTTTTTAA
CGCTTTGAATGATGCGTTCAACTCCAGTGCTTTTTTAAATGTGATAAACCTAGATGCTATCACTCAAAACCCTAAAGATT
TAGGGCTTTTAGCCTATTATTTGTTTTATAAGATCTTAGAAGAGTCCAGGAAAAACGACAGCGGCTTTTTGGTTTTTTTA
GACGAATTTAAATCCTATGTGGAAAACGATTTGTTGAACACTAAAATCAACGCTTTAATCACGCAAGCCAGGAAAGCTAA
TGGCGTGGTGGTGTTGGCTTTGCAAGATATTTACCAATTAAGTGGAGTCAAAAACGCCCATAGTTTTTTAAGCAACATGG
GGACTCTCATTTTGTATCCGCAAAAAAACGCTAGGGAATTGAAACACAACTTCAATGTGCCTTTGAGCGAGACTGAAATT
TCATTTTTAGAAAACACCCCTTTGTATGCCAGGCAGGTTTTAGTCAAAAATCTGGGTAACGGGAGTTCTAACATGATTGA
TGTGAGTTTGGAGGGCTTGGGGCGTTATTTGAAGATCTTTAATTCAGATTCTAGTCATGTGAATAAAGTGAAAGCGTTAC
AAAAAGACTACCCTACAGAGTGGCGTGAGAAACTTTTGAAGAGTTAG

Domains

Predicted by InterproScan.

CagE, TrbE, VirB family, component of type IV transporter system (CagE_TrbE_VirB)

(176-376)

FtsK/SpoIIIE family (FtsK_SpoIIIE)

(427-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A238GTG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB4 Helicobacter pylori 26695

97.335

100

0.973

Multiple sequence alignment