Detailed information
Bioinformatically predicted
Overview
| Name | comH | Type | Machinery gene |
| Locus tag | CS885_RS03870 | Genome accession | NZ_LT838273 |
| Coordinates | 782644..784095 (+) | Length | 483 a.a. |
| NCBI ID | WP_089087212.1 | Uniprot ID | A0A238GX06 |
| Organism | Helicobacter pylori isolate HE93/10_v1 | ||
| Function | import of DNA into the periplasm (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 777644..789095
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS885_RS03850 | glmS | 778279..780072 (-) | 1794 | WP_089087209.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
| CS885_RS03855 | - | 780073..780312 (-) | 240 | WP_000461837.1 | DUF2443 domain-containing protein | - |
| CS885_RS03860 | - | 780347..780889 (-) | 543 | WP_089087210.1 | purine-nucleoside phosphorylase | - |
| CS885_RS03865 | dnaA | 781042..782415 (+) | 1374 | WP_089087211.1 | chromosomal replication initiator protein DnaA | - |
| CS885_RS03870 | comH | 782644..784095 (+) | 1452 | WP_089087212.1 | competence protein | Machinery gene |
| CS885_RS03880 | - | 784275..785027 (+) | 753 | WP_078295316.1 | exodeoxyribonuclease III | - |
| CS885_RS03885 | - | 785024..785659 (-) | 636 | WP_000668058.1 | outer membrane protein | - |
| CS885_RS03890 | - | 785663..786010 (-) | 348 | WP_000837062.1 | hypothetical protein | - |
| CS885_RS03895 | recG | 786087..787958 (+) | 1872 | WP_089087395.1 | ATP-dependent DNA helicase RecG | - |
Sequence
Protein
Download Length: 483 a.a. Molecular weight: 55168.01 Da Isoelectric Point: 6.7016
>NTDB_id=1146395 CS885_RS03870 WP_089087212.1 782644..784095(+) (comH) [Helicobacter pylori isolate HE93/10_v1]
MKKSLYLSFFLTFSNPLQALVIELLEEIKTSSHKGTFKAKVLDSKEPKQVLGIYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLSPNRPTIPRNTQIVFSSKELKEPHSNPIPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPL
VTPSKISPANEVKTPTNDANPPLKHSSEDQENNLFVTPPTEKTLPNNTPNADASENNENNENNENNRDNVEKQAIRDPNI
KEFACGKWVYDDENLQAYRPSVLKRVDKDKEVTTDITPCDYSTAENKSGKIITPYTKISVHKTEPLEDPQTFEAKNNFAI
LQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEIT
RNELNLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLF
NEV
MKKSLYLSFFLTFSNPLQALVIELLEEIKTSSHKGTFKAKVLDSKEPKQVLGIYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLSPNRPTIPRNTQIVFSSKELKEPHSNPIPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPL
VTPSKISPANEVKTPTNDANPPLKHSSEDQENNLFVTPPTEKTLPNNTPNADASENNENNENNENNRDNVEKQAIRDPNI
KEFACGKWVYDDENLQAYRPSVLKRVDKDKEVTTDITPCDYSTAENKSGKIITPYTKISVHKTEPLEDPQTFEAKNNFAI
LQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEIT
RNELNLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLF
NEV
Nucleotide
Download Length: 1452 bp
>NTDB_id=1146395 CS885_RS03870 WP_089087212.1 782644..784095(+) (comH) [Helicobacter pylori isolate HE93/10_v1]
ATGAAAAAATCCCTTTATTTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGTCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAGCCCAAACAGGTTTTAGGCATTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACGGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAGCCCCAACCGCCCTACTATTCCCAGAAACACCCAAATCGTTTTTTCTTCAAAGGA
ATTAAAAGAACCGCACTCAAACCCAATACCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCAGCTCATCGC
AACAATCTCCTCAAAACTTTTCCTATCCAGAATCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCTAGCAAAATAAGCCCTGCTAACGAAGTTAAAACGCCAACAAACGACGCTAATCCCCCTTTAAAACATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATGCGA
GTGAAAACAATGAAAACAATGAAAACAATGAAAATAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATATC
AAGGAATTCGCATGCGGGAAGTGGGTTTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCGTTTTAAAACGCGTTGA
TAAAGACAAAGAGGTTACAACAGACATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAGATCATTACCC
CTTATACCAAAATTTCTGTTCATAAAACAGAGCCTTTAGAAGACCCTCAAACTTTTGAAGCTAAAAACAATTTCGCCATT
CTCCAAGCCAGAAGCTCTACAGAAAAATGCAAAAGGGCTAGAGCGAGAAAAGACGGCACGACTAGGCAATGCTATCTGAT
AGAAGAGCCTTTAAAACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCA
AACAAGACGACCAAATAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACG
CGCAATGAATTGAATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAA
AGAGAGCAGCGAATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAG
AACAACCACGAGCCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTC
AATGAAGTTTAA
ATGAAAAAATCCCTTTATTTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGTCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAGCCCAAACAGGTTTTAGGCATTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACGGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAGCCCCAACCGCCCTACTATTCCCAGAAACACCCAAATCGTTTTTTCTTCAAAGGA
ATTAAAAGAACCGCACTCAAACCCAATACCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCAGCTCATCGC
AACAATCTCCTCAAAACTTTTCCTATCCAGAATCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCTAGCAAAATAAGCCCTGCTAACGAAGTTAAAACGCCAACAAACGACGCTAATCCCCCTTTAAAACATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATGCGA
GTGAAAACAATGAAAACAATGAAAACAATGAAAATAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATATC
AAGGAATTCGCATGCGGGAAGTGGGTTTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCGTTTTAAAACGCGTTGA
TAAAGACAAAGAGGTTACAACAGACATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAGATCATTACCC
CTTATACCAAAATTTCTGTTCATAAAACAGAGCCTTTAGAAGACCCTCAAACTTTTGAAGCTAAAAACAATTTCGCCATT
CTCCAAGCCAGAAGCTCTACAGAAAAATGCAAAAGGGCTAGAGCGAGAAAAGACGGCACGACTAGGCAATGCTATCTGAT
AGAAGAGCCTTTAAAACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCA
AACAAGACGACCAAATAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACG
CGCAATGAATTGAATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAA
AGAGAGCAGCGAATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAG
AACAACCACGAGCCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTC
AATGAAGTTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comH | Helicobacter pylori 26695 |
91.511 |
100 |
0.915 |