Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   BCM300_RS06795 Genome accession   NZ_LT837687
Coordinates   1363702..1365153 (+) Length   483 a.a.
NCBI ID   WP_089087212.1    Uniprot ID   A0A238GX06
Organism   Helicobacter pylori isolate BCM-300     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1358702..1370153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM300_RS06775 (BCM300_01332) glmS 1359337..1361130 (-) 1794 WP_089087209.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  BCM300_RS06780 (BCM300_01333) - 1361131..1361370 (-) 240 WP_000461837.1 DUF2443 domain-containing protein -
  BCM300_RS06785 (BCM300_01334) - 1361405..1361947 (-) 543 WP_089087210.1 purine-nucleoside phosphorylase -
  BCM300_RS06790 (BCM300_01335) dnaA 1362100..1363473 (+) 1374 WP_089087211.1 chromosomal replication initiator protein DnaA -
  BCM300_RS06795 (BCM300_01336) comH 1363702..1365153 (+) 1452 WP_089087212.1 competence protein Machinery gene
  BCM300_RS06805 (BCM300_01338) - 1365333..1366085 (+) 753 WP_078295316.1 exodeoxyribonuclease III -
  BCM300_RS06810 (BCM300_01339) - 1366082..1366717 (-) 636 WP_000668058.1 outer membrane protein -
  BCM300_RS06815 (BCM300_01340) - 1366721..1367068 (-) 348 WP_000837062.1 hypothetical protein -
  BCM300_RS06820 (BCM300_01341) recG 1367145..1369016 (+) 1872 WP_089087395.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 55168.01 Da        Isoelectric Point: 6.7016

>NTDB_id=1146343 BCM300_RS06795 WP_089087212.1 1363702..1365153(+) (comH) [Helicobacter pylori isolate BCM-300]
MKKSLYLSFFLTFSNPLQALVIELLEEIKTSSHKGTFKAKVLDSKEPKQVLGIYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLSPNRPTIPRNTQIVFSSKELKEPHSNPIPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPL
VTPSKISPANEVKTPTNDANPPLKHSSEDQENNLFVTPPTEKTLPNNTPNADASENNENNENNENNRDNVEKQAIRDPNI
KEFACGKWVYDDENLQAYRPSVLKRVDKDKEVTTDITPCDYSTAENKSGKIITPYTKISVHKTEPLEDPQTFEAKNNFAI
LQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEIT
RNELNLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLF
NEV

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=1146343 BCM300_RS06795 WP_089087212.1 1363702..1365153(+) (comH) [Helicobacter pylori isolate BCM-300]
ATGAAAAAATCCCTTTATTTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGTCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAGCCCAAACAGGTTTTAGGCATTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACGGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAGCCCCAACCGCCCTACTATTCCCAGAAACACCCAAATCGTTTTTTCTTCAAAGGA
ATTAAAAGAACCGCACTCAAACCCAATACCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCAGCTCATCGC
AACAATCTCCTCAAAACTTTTCCTATCCAGAATCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCTAGCAAAATAAGCCCTGCTAACGAAGTTAAAACGCCAACAAACGACGCTAATCCCCCTTTAAAACATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATGCGA
GTGAAAACAATGAAAACAATGAAAACAATGAAAATAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATATC
AAGGAATTCGCATGCGGGAAGTGGGTTTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCGTTTTAAAACGCGTTGA
TAAAGACAAAGAGGTTACAACAGACATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAGATCATTACCC
CTTATACCAAAATTTCTGTTCATAAAACAGAGCCTTTAGAAGACCCTCAAACTTTTGAAGCTAAAAACAATTTCGCCATT
CTCCAAGCCAGAAGCTCTACAGAAAAATGCAAAAGGGCTAGAGCGAGAAAAGACGGCACGACTAGGCAATGCTATCTGAT
AGAAGAGCCTTTAAAACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCA
AACAAGACGACCAAATAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACG
CGCAATGAATTGAATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAA
AGAGAGCAGCGAATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAG
AACAACCACGAGCCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTC
AATGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A238GX06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.511

100

0.915

Multiple sequence alignment