Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B6E89_RS01620 Genome accession   NZ_LT821323
Coordinates   357919..359280 (+) Length   453 a.a.
NCBI ID   WP_035406143.1    Uniprot ID   -
Organism   Chlamydia suis isolate SWA-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 352919..364280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6E89_RS01595 accD 353021..353914 (-) 894 WP_035406132.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  B6E89_RS01600 - 353985..354605 (-) 621 WP_080126936.1 superoxide dismutase -
  B6E89_RS01605 - 354737..356518 (-) 1782 WP_080132975.1 phospho-sugar mutase -
  B6E89_RS01610 - 356665..357132 (-) 468 WP_080133258.1 DUF5070 domain-containing protein -
  B6E89_RS01615 rnc 357240..357935 (+) 696 WP_080121352.1 ribonuclease III -
  B6E89_RS01620 radA 357919..359280 (+) 1362 WP_035406143.1 DNA repair protein RadA Machinery gene
  B6E89_RS01625 - 359258..360013 (+) 756 WP_080132977.1 hydroxymethylbilane synthase -
  B6E89_RS01630 - 360088..360645 (+) 558 WP_080123707.1 hypothetical protein -
  B6E89_RS01635 - 360705..361049 (+) 345 WP_157779246.1 hypothetical protein -
  B6E89_RS01640 pknD 361121..363913 (-) 2793 WP_080132983.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49637.14 Da        Isoelectric Point: 7.7237

>NTDB_id=1146272 B6E89_RS01620 WP_035406143.1 357919..359280(+) (radA) [Chlamydia suis isolate SWA-2]
MTTKTKTQWGCTTCGSYSPKWLGQCPGCLNWNTLVEEKLPYKPNTSSLPSSTAPIPLNTVEFQEEIRLHTRAPGWNRLLG
GGTVRGSLTLLGGEPGIGKSTLLLQISSQFAQQGYSVLYVCGEESVSQTSLRAQRLNISSSNIFLFPETNLDDIKRQITN
LNPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHLAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNAH
ANYRMIRSVKNRFGPTNELLILAMETNGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLVEMQALVSSSPFSNPVR
KTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKISQPSADLGAVLSVVSSLYNRFLPKNYTYTGEIGLGGEIRH
VTHIESRIKESILMGFKGIVLPFGQMKGLPEEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1146272 B6E89_RS01620 WP_035406143.1 357919..359280(+) (radA) [Chlamydia suis isolate SWA-2]
ATGACAACAAAAACTAAAACACAATGGGGTTGTACGACATGCGGCTCTTATTCTCCAAAATGGCTAGGACAATGTCCCGG
GTGTCTTAACTGGAATACTTTGGTCGAAGAAAAACTTCCTTATAAACCAAACACCTCGTCCCTACCCAGCTCCACAGCCC
CAATACCTCTAAACACTGTAGAATTTCAGGAAGAGATCCGACTGCATACTCGTGCTCCAGGATGGAATCGCCTTCTTGGA
GGAGGGACTGTTCGCGGTAGTTTAACCCTGCTAGGAGGAGAGCCCGGTATTGGAAAATCCACCCTATTGCTTCAAATTTC
TTCTCAATTTGCCCAACAAGGCTATTCAGTATTGTATGTTTGTGGGGAAGAATCCGTGTCCCAAACTTCATTACGCGCAC
AACGACTAAACATCTCTAGCAGCAATATTTTTCTATTCCCAGAAACAAACTTAGACGATATCAAACGACAGATCACAAAT
CTTAATCCAGATATCTTAGTCATAGATTCTATTCAGATCATTTTTTCTCCATCGCTAAGCTCTGCTCCAGGATCTGTTGC
CCAAGTCCGGGAGACCACAGCAGAACTTATGCATCTCGCGAAACAAAAACAGATAACGACCTTTATTATTGGGCACGTTA
CCAAATCAGGAGAGATCGCAGGACCTCGTATTCTTGAACATTTAGTAGATACAGTTCTTTATTTCGAAGGCAATGCACAT
GCCAATTATCGCATGATCCGCTCCGTCAAAAACCGCTTCGGCCCAACTAACGAGCTACTGATTCTTGCCATGGAGACGAA
TGGATTGCGTGAAGTAGAAAATCCTTCGGGACTTTTTTTACAAGAAAAAATTGTAGAAACAACCGGCTCTACCATTATTC
CTATTGTAGAGGGATCAGAAACGCTTCTTGTCGAAATGCAAGCGCTTGTTTCCTCATCTCCATTCTCAAACCCCGTACGA
AAAACTTCTGGATTTGACCCCAACCGATTCTCTTTGCTCTTAGCGGTTTTAGAAAAAAGAGCCAATGTTAAATTATACAC
TTCCGATGTCTTTCTCTCTATAGCAGGAGGTTTAAAAATCTCACAACCTTCAGCAGATTTGGGAGCGGTGCTATCGGTCG
TTTCTTCCCTATATAATCGCTTTTTACCTAAAAACTATACCTATACTGGGGAAATCGGACTGGGAGGGGAGATTCGGCAC
GTTACACACATAGAATCCCGCATAAAAGAGAGTATTCTTATGGGATTTAAAGGCATTGTTCTGCCTTTCGGGCAAATGAA
AGGTTTACCTGAAGAATTTTTGGATCAAATTGACATTATTGGAGTAAAAACAATCAAAGATGCTGTCCGCTTATTACAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(67-217)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.49
  radA Streptococcus pneumoniae Rx1

47.566

99.779

0.475
  radA Streptococcus pneumoniae D39

47.566

99.779

0.475
  radA Streptococcus pneumoniae R6

47.566

99.779

0.475
  radA Streptococcus pneumoniae TIGR4

47.566

99.779

0.475
  radA Streptococcus mitis NCTC 12261

47.345

99.779

0.472
  radA Streptococcus mitis SK321

47.111

99.338

0.468

Multiple sequence alignment