Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BUC38_RS11625 Genome accession   NZ_LT671674
Coordinates   2382287..2383654 (-) Length   455 a.a.
NCBI ID   WP_061704550.1    Uniprot ID   -
Organism   Streptococcus suis strain LS9N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2372148..2384644 2382287..2383654 within 0


Gene organization within MGE regions


Location: 2372148..2384644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS12880 - 2372148..2372738 (-) 591 WP_366536235.1 MFS transporter -
  BUC38_RS11570 - 2372738..2373778 (-) 1041 WP_024376108.1 ThiF family adenylyltransferase -
  BUC38_RS11575 - 2373996..2375282 (-) 1287 WP_044689754.1 MFS transporter -
  BUC38_RS11580 - 2375369..2376034 (-) 666 WP_044689753.1 hypothetical protein -
  BUC38_RS11585 - 2376039..2376485 (-) 447 WP_044689752.1 LytTR family DNA-binding domain-containing protein -
  BUC38_RS11595 - 2377091..2377951 (-) 861 WP_044689751.1 class C sortase -
  BUC38_RS11600 - 2377948..2378808 (-) 861 WP_044672877.1 class C sortase -
  BUC38_RS11605 - 2378786..2379697 (-) 912 WP_044672883.1 class C sortase -
  BUC38_RS11615 - 2380377..2381135 (-) 759 WP_002939965.1 TIGR00266 family protein -
  BUC38_RS11620 - 2381407..2381901 (-) 495 WP_044689750.1 carbonic anhydrase -
  BUC38_RS11625 radA 2382287..2383654 (-) 1368 WP_061704550.1 DNA repair protein RadA Machinery gene
  BUC38_RS11630 - 2383661..2384194 (-) 534 WP_044690094.1 histidine phosphatase family protein -
  BUC38_RS11635 - 2384201..2384644 (-) 444 WP_024388517.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49899.48 Da        Isoelectric Point: 6.5158

>NTDB_id=1146017 BUC38_RS11625 WP_061704550.1 2382287..2383654(-) (radA) [Streptococcus suis strain LS9N]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTLGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKIPKEITVIGVTTIGEVLQKVFK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1146017 BUC38_RS11625 WP_061704550.1 2382287..2383654(-) (radA) [Streptococcus suis strain LS9N]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCGATGAAGCTCAATGAAGTGTCGTCTATTCAAGTGGCTCGCACCAAGACCAACATGGAAGAGTTCAAC
CGCGTCCTTGGTGGCGGCGTGGTGCCGGGTAGTCTAGTTCTCATTGGAGGCGATCCAGGGATTGGGAAGTCCACCCTGCT
CCTGCAAGTATCGACCCAACTTTCGACTCTTGGCACTGTCCTCTACGTGTCGGGGGAGGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAAACCATCATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAACGAGCTCATGCAGATTGCCAAGACCAATAACATCGCAACATTCATCGTCG
GCCACATGACCAAGGAAGGAACCTTGGCTGGACCGCGGACCTTGGAGCACATGGTGGACACCGTTCTTTATTTTGAGGGC
GAGCGTCAACACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGTTTTGGCTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACTCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTAGATGAGCCAGCCATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGTATCAAGATACCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGTGAAGTCTTGCAGAAAGTGT
TTAAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment