Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   BUC38_RS10500 Genome accession   NZ_LT671674
Coordinates   2155393..2156127 (-) Length   244 a.a.
NCBI ID   WP_002942356.1    Uniprot ID   G7SIC8
Organism   Streptococcus suis strain LS9N     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2150393..2161127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS10470 - 2150621..2150917 (-) 297 WP_002942375.1 YlxR family protein -
  BUC38_RS10475 nusA 2150934..2152076 (-) 1143 WP_002942372.1 transcription termination factor NusA -
  BUC38_RS10480 rimP 2152149..2152619 (-) 471 WP_073259504.1 ribosome maturation factor RimP -
  BUC38_RS10485 trmB 2152877..2153515 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  BUC38_RS10490 ccrZ 2153512..2154306 (-) 795 WP_044691635.1 cell cycle regulator CcrZ -
  BUC38_RS10495 - 2154356..2155396 (-) 1041 WP_044691637.1 ABC transporter permease -
  BUC38_RS10500 pptA 2155393..2156127 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  BUC38_RS10505 - 2156190..2156603 (+) 414 WP_029188404.1 HIT family protein -
  BUC38_RS10510 - 2156605..2156934 (+) 330 WP_044691639.1 hypothetical protein -
  BUC38_RS10515 - 2157135..2158487 (-) 1353 WP_073259453.1 IS66-like element short variant transposase -
  BUC38_RS10520 - 2158441..2158647 (-) 207 WP_002941576.1 hypothetical protein -
  BUC38_RS10525 tnpB 2158699..2159049 (-) 351 WP_002941575.1 IS66 family insertion sequence element accessory protein TnpB -
  BUC38_RS10530 - 2159030..2159215 (-) 186 WP_002942274.1 hypothetical protein -
  BUC38_RS10535 - 2159587..2160780 (-) 1194 WP_044691183.1 LCP family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26832.10 Da        Isoelectric Point: 4.3606

>NTDB_id=1146012 BUC38_RS10500 WP_002942356.1 2155393..2156127(-) (pptA) [Streptococcus suis strain LS9N]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1146012 BUC38_RS10500 WP_002942356.1 2155393..2156127(-) (pptA) [Streptococcus suis strain LS9N]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAGGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGATTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACTCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment