Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BUC38_RS01330 Genome accession   NZ_LT671674
Coordinates   258998..259711 (+) Length   237 a.a.
NCBI ID   WP_044689653.1    Uniprot ID   A0A0Z8JXD8
Organism   Streptococcus suis strain LS9N     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 253998..264711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS01315 - 254333..254983 (-) 651 WP_044689647.1 TetR/AcrR family transcriptional regulator -
  BUC38_RS01320 treC 255065..256690 (-) 1626 WP_044689648.1 alpha,alpha-phosphotrehalase -
  BUC38_RS01325 treP 256771..258765 (-) 1995 WP_044689652.1 PTS system trehalose-specific EIIBC component -
  BUC38_RS01330 treR 258998..259711 (+) 714 WP_044689653.1 trehalose operon repressor Regulator
  BUC38_RS01335 - 259769..260080 (+) 312 WP_002935948.1 hypothetical protein -
  BUC38_RS01340 - 260077..260625 (+) 549 WP_044689654.1 CvpA family protein -
  BUC38_RS01345 - 260782..263115 (+) 2334 WP_044672845.1 endonuclease MutS2 -
  BUC38_RS01350 - 263237..264550 (+) 1314 Protein_225 IS1182 family transposase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27229.15 Da        Isoelectric Point: 6.7419

>NTDB_id=1145980 BUC38_RS01330 WP_044689653.1 258998..259711(+) (treR) [Streptococcus suis strain LS9N]
MKKYQEIYNDLKEKIRTNVYLAESSLPTEQQLQELYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTSREERDLMQIQDDYLVLIKSRVYLGDTRQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1145980 BUC38_RS01330 WP_044689653.1 258998..259711(+) (treR) [Streptococcus suis strain LS9N]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCTGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTCCAGGAACTCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAGTCGAGAAGA
ACGAGATTTGATGCAGATTCAGGATGATTATCTGGTGTTGATAAAATCCAGGGTCTACTTAGGAGATACGCGACAATTTC
AATACACTGAAAGTAAGCACAAGATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8JXD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment