Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QI18_RS04320 Genome accession   NZ_CP010050
Coordinates   865947..867614 (+) Length   555 a.a.
NCBI ID   WP_039115035.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain S0 isolate fresh raw milk     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 860947..872614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI18_RS04295 (QI18_04295) - 861987..862226 (+) 240 WP_003131346.1 exodeoxyribonuclease VII small subunit -
  QI18_RS04300 (QI18_04300) - 862375..863532 (+) 1158 WP_023189851.1 glycerate kinase -
  QI18_RS04305 (QI18_04305) - 863614..864471 (+) 858 WP_039115032.1 polyprenyl synthetase family protein -
  QI18_RS04310 (QI18_04310) - 864550..865356 (+) 807 WP_015426159.1 TlyA family RNA methyltransferase -
  QI18_RS04315 (QI18_04315) - 865353..865799 (+) 447 WP_003131351.1 arginine repressor -
  QI18_RS04320 (QI18_04320) recN 865947..867614 (+) 1668 WP_039115035.1 DNA repair protein RecN Machinery gene
  QI18_RS04330 (QI18_04330) - 868339..868905 (+) 567 WP_039115042.1 TMEM175 family protein -
  QI18_RS04335 (QI18_04335) - 869003..869524 (+) 522 WP_003131354.1 DUF805 domain-containing protein -
  QI18_RS04340 (QI18_04340) - 869548..870486 (+) 939 WP_025016680.1 DUF805 domain-containing protein -
  QI18_RS04345 (QI18_04345) rsmH 870706..871659 (+) 954 WP_080756595.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  QI18_RS04350 (QI18_04350) - 871817..872197 (+) 381 WP_039115043.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62840.05 Da        Isoelectric Point: 4.6475

>NTDB_id=114598 QI18_RS04320 WP_039115035.1 865947..867614(+) (recN) [Lactococcus lactis subsp. lactis strain S0 isolate fresh raw milk]
MLQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGRASSDFVRHGANKAEIEGLFFFDKTPELKTVL
LELGFEEVDSEIILRREIFANGRSVCRINGQMVNLATLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEAFDQIKN
NYKLKFENFKNLRQQLNLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLVNRREKLNNIKNIADSLSSAYLALDDE
DNDYSSLNNIRTTMTELDKISNFDNDYQELADKTAESYYVLEEVANQIQRIMSDLEFNPAELLQIEDRIMTLTTLKKKYG
PELSDVMNYLEKVQLELSELTGSENDSENLENTVKVAQVQLIEASKKLNEARHKIAKEVEKDIKHELSELYMEKADFKVS
FEGAKFSANGNEHVEFFIQTNPGEGFKPLAKTASGGELSRLMLAIKSSFSRRENKTAIVFDEVDTGVSGRVAQAIANKIY
KIARHGQVLAISHLPQVVAIADRQFYIEKASTDDITTSTVRKLNAEERVNEIAKMLAGEDLTKEALAQAKRLLSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=114598 QI18_RS04320 WP_039115035.1 865947..867614(+) (recN) [Lactococcus lactis subsp. lactis strain S0 isolate fresh raw milk]
ATGTTACAAGAGATTTCAATCAAAAATTTTGCAATTATTGAAGAAATTCATCTATCCTTTGAGAGCGGAATGACGATTTT
AACTGGGGAAACTGGTGCGGGAAAATCAATAATTATTGATGCAATGTCTTTATTATTAGGTGGCCGTGCTTCGAGTGATT
TTGTGCGACATGGGGCAAACAAAGCCGAAATAGAAGGTCTCTTTTTCTTTGATAAAACTCCAGAATTGAAGACGGTATTA
TTAGAACTTGGCTTTGAAGAAGTAGATTCTGAAATTATTTTAAGACGTGAGATTTTTGCTAATGGTCGTTCCGTTTGTCG
AATCAATGGTCAAATGGTTAATTTAGCTACGCTAAGACAAGTGGGTGAATTATTAGTTGATATTCATGGTCAACACGATA
GCCAAGAATTGATGAATCCGAAAAGCCATCTTCGTTTACTTGATGAATTTGGTGACGAAGCCTTTGATCAGATAAAAAAT
AATTACAAACTCAAATTTGAAAACTTCAAAAATTTGCGTCAACAGCTCAATTTACGACAAAAAAATGAGCAAGAATTTGC
TCAAAGAATTGAAATCCTTCAATTTCAGGCTGAAGAAATTGAAGCGGCGGAAATTAATCTTGAAGAAGATGAACAATTAG
TTAATCGCCGAGAAAAGTTAAATAATATTAAAAATATTGCTGATTCGCTTAGTAGTGCTTATCTAGCGCTTGATGATGAA
GATAATGATTATTCAAGTCTTAATAATATCCGAACAACAATGACAGAATTGGATAAAATTAGTAACTTTGATAATGACTA
CCAAGAGCTTGCTGACAAGACAGCTGAAAGTTATTATGTATTAGAAGAAGTTGCTAATCAAATTCAAAGAATCATGAGTG
ATTTAGAATTTAATCCAGCTGAACTTTTACAAATTGAAGACCGGATTATGACCTTGACCACTTTGAAGAAAAAATATGGC
CCAGAACTGTCCGATGTGATGAACTATTTAGAGAAAGTCCAACTTGAACTCTCAGAACTGACGGGTTCAGAAAATGACTC
AGAAAATCTAGAAAATACAGTTAAAGTTGCACAAGTTCAACTCATTGAAGCAAGTAAAAAACTTAATGAAGCGCGCCATA
AAATTGCCAAAGAAGTTGAAAAAGATATTAAACACGAACTTTCTGAGCTTTATATGGAAAAAGCTGATTTCAAAGTTAGT
TTTGAAGGGGCAAAATTTTCAGCAAACGGGAATGAGCATGTTGAATTCTTTATTCAAACCAATCCGGGAGAAGGATTTAA
ACCGCTGGCAAAAACAGCTTCGGGTGGTGAACTTTCACGTTTAATGCTCGCTATAAAATCAAGCTTTTCAAGACGTGAAA
ATAAAACAGCCATTGTTTTTGATGAGGTCGATACTGGCGTTTCTGGCCGTGTTGCTCAAGCGATTGCTAATAAAATATAT
AAAATTGCTAGACATGGGCAAGTTCTTGCAATTTCTCACCTTCCGCAAGTTGTGGCCATTGCCGACAGACAATTTTATAT
TGAAAAAGCTTCAACCGATGACATTACTACTTCCACAGTTAGAAAATTAAACGCTGAAGAAAGAGTAAATGAAATTGCGA
AAATGCTTGCTGGTGAAGATTTAACTAAAGAAGCCTTAGCTCAGGCTAAACGTTTATTGAGCAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.182

100

0.445

Multiple sequence alignment