Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BQ6873_RS13390 Genome accession   NZ_LT671418
Coordinates   2830148..2831617 (-) Length   489 a.a.
NCBI ID   WP_076593080.1    Uniprot ID   -
Organism   Herminiimonas arsenitoxidans strain AS8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2825148..2836617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ6873_RS13380 - 2828953..2829612 (+) 660 WP_231949338.1 energy transducer TonB -
  BQ6873_RS13385 hpf 2829682..2830044 (-) 363 WP_076593079.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BQ6873_RS13390 rpoN/rpoN1 2830148..2831617 (-) 1470 WP_076593080.1 RNA polymerase factor sigma-54 Machinery gene
  BQ6873_RS13395 lptB 2831639..2832379 (-) 741 WP_076593081.1 LPS export ABC transporter ATP-binding protein -
  BQ6873_RS13400 lptA 2832381..2832935 (-) 555 WP_076593082.1 lipopolysaccharide transport periplasmic protein LptA -
  BQ6873_RS13405 lptC 2832982..2833575 (-) 594 WP_076593083.1 LPS export ABC transporter periplasmic protein LptC -
  BQ6873_RS13410 - 2833572..2834123 (-) 552 WP_076593084.1 HAD family hydrolase -
  BQ6873_RS13415 - 2834123..2835151 (-) 1029 WP_076594132.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 54978.71 Da        Isoelectric Point: 5.2058

>NTDB_id=1145955 BQ6873_RS13390 WP_076593080.1 2830148..2831617(-) (rpoN/rpoN1) [Herminiimonas arsenitoxidans strain AS8]
MKQSLQLRVSQHLALTPQLQQSIRLLQLSTLELHQELEQILADNPMLERTDDPLDHAIRLLADGAIGANGTTPEGASVEA
NAQTPESETTFDAPDLPEASSAESEWSFDDVARTSKAPEDDDARPQLEAHETTLREHLLEQMRVTVRERRDRALLELIID
ALNDNGYLEEELEEIHARLPEELEIELEELQIALNLLQSFDPAGVGARNASECLALQIKRFPKVAMVTRRMALAIVENHL
PLFAQRDFNKLRKALDCDDEDLREAQVIIKQCNPHPGSIFATDTSDYVVPDVIVKRTRNGWQVMLNHDVMPRLRVNSMYA
NILKQSKGEGSLGSQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRVTTQ
KYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIKQLIGAEDPKIPFSDSKIADMLAEQGMVVARRTVAKYREALKI
PPVNLRKSL

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=1145955 BQ6873_RS13390 WP_076593080.1 2830148..2831617(-) (rpoN/rpoN1) [Herminiimonas arsenitoxidans strain AS8]
ATGAAGCAATCCCTGCAATTACGAGTCTCGCAACATCTGGCCTTAACGCCACAACTACAACAATCGATACGCTTGTTGCA
GTTGTCGACTCTTGAATTGCATCAGGAACTGGAACAGATCCTGGCCGACAATCCGATGCTGGAGCGTACCGATGATCCGC
TCGATCATGCGATACGCTTGCTGGCTGACGGTGCCATCGGTGCAAACGGCACCACACCGGAAGGCGCCAGCGTCGAAGCC
AACGCCCAAACGCCCGAGAGTGAAACAACATTCGACGCACCCGATTTACCAGAAGCTTCCAGCGCTGAAAGCGAATGGAG
CTTTGACGATGTCGCACGCACATCGAAGGCACCGGAAGATGACGACGCCCGTCCGCAACTGGAAGCGCACGAGACCACAC
TGCGCGAACACTTGCTGGAACAGATGCGCGTCACCGTACGCGAACGACGCGACCGCGCCTTGCTTGAACTCATCATCGAT
GCACTGAACGACAACGGCTATCTGGAAGAAGAGCTGGAAGAAATTCACGCACGCCTGCCAGAAGAACTAGAGATCGAACT
GGAAGAATTGCAGATCGCCTTGAATCTGCTGCAAAGCTTCGATCCAGCCGGCGTCGGTGCGCGCAATGCTTCTGAATGTC
TTGCATTGCAAATCAAGCGCTTCCCGAAAGTGGCGATGGTGACGCGCCGCATGGCACTCGCCATTGTGGAAAATCATCTC
CCCCTATTTGCGCAACGCGACTTCAACAAGCTGCGCAAGGCACTCGATTGCGACGATGAAGATCTGCGCGAAGCACAAGT
CATCATCAAGCAATGCAATCCGCACCCAGGTTCGATCTTCGCCACCGATACATCGGATTATGTGGTGCCGGACGTCATCG
TCAAACGCACGCGCAATGGCTGGCAAGTCATGCTCAATCACGACGTCATGCCGCGCCTGCGCGTTAATAGCATGTATGCC
AACATTTTGAAGCAAAGCAAGGGCGAAGGATCGCTTGGTTCCCAGCTGCAAGAGGCTAAATGGCTAATCAAAAACATGCG
CCAGCGCTTCGACACCATCCTTCGTGTCGCACAGGCAATTGTAGAGCGGCAAAAAAACTTTTTTTCACATGGTGCAGTTG
CCATGCGACCGCTTGTTTTACGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATTTCACGTGTAACCACCCAG
AAGTACATGCTCACCCCACACGGGATGTTCGAATTGAAATATTTTTTCGGCAGCCATGTCGCAACAGAAGCTGGTGGCGA
AGCGTCATCAACTGCGATACGGGCACTGATCAAACAATTGATAGGAGCCGAAGACCCGAAAATTCCATTCTCTGATAGCA
AGATTGCCGACATGCTGGCAGAACAAGGCATGGTGGTAGCAAGACGGACCGTCGCAAAATATCGTGAAGCCTTGAAGATT
CCACCGGTCAATCTGCGCAAGTCGTTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(334-487)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(127-319)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.486

100

0.616

Multiple sequence alignment