Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QI18_RS02095 Genome accession   NZ_CP010050
Coordinates   417335..418147 (-) Length   270 a.a.
NCBI ID   WP_039114610.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain S0 isolate fresh raw milk     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 412335..423147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI18_RS02070 (QI18_02070) ytpR 412561..413187 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  QI18_RS02075 (QI18_02075) nox 413350..414690 (+) 1341 WP_039114608.1 H2O-forming NADH oxidase -
  QI18_RS02080 (QI18_02080) - 414780..415169 (+) 390 WP_010905314.1 single-stranded DNA-binding protein -
  QI18_RS02085 (QI18_02085) groES 415289..415573 (+) 285 WP_003131589.1 co-chaperone GroES -
  QI18_RS02090 (QI18_02090) groL 415661..417289 (+) 1629 WP_003131585.1 chaperonin GroEL -
  QI18_RS02095 (QI18_02095) vicX 417335..418147 (-) 813 WP_039114610.1 MBL fold metallo-hydrolase Regulator
  QI18_RS02100 (QI18_02100) vicK 418316..419758 (-) 1443 WP_052230896.1 sensor histidine kinase Regulator
  QI18_RS02105 (QI18_02105) yycF 419751..420452 (-) 702 WP_003131580.1 response regulator YycF -
  QI18_RS02110 (QI18_02110) tmk 420630..421265 (+) 636 WP_012897230.1 dTMP kinase -
  QI18_RS02115 (QI18_02115) - 421398..422258 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  QI18_RS02120 (QI18_02120) yaaT 422310..423092 (+) 783 WP_039114615.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30450.31 Da        Isoelectric Point: 6.0013

>NTDB_id=114585 QI18_RS02095 WP_039114610.1 417335..418147(-) (vicX) [Lactococcus lactis subsp. lactis strain S0 isolate fresh raw milk]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRGIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDVESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=114585 QI18_RS02095 WP_039114610.1 417335..418147(-) (vicX) [Lactococcus lactis subsp. lactis strain S0 isolate fresh raw milk]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGGCATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATGTTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.148

100

0.681