Detailed information NTG1145837

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: CS883_RS00215
• Genome accession: NZ_LT635476
• Coordinates: 39169..40224 (+)
• Length: 351 a.a.
• NCBI ID: WP_089086475.1
• Uniprot ID: -
• Organism: Helicobacter pylori isolate HE134/09
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34169..45224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CS883_RS00185	-	34591..35004 (+)	414	WP_001023005.1	universal stress protein	-
CS883_RS00190	-	35006..35281 (+)	276	WP_000781792.1	ATP-dependent Clp protease adaptor ClpS	-
CS883_RS00195	-	35281..37509 (+)	2229	WP_089086473.1	AAA family ATPase	-
CS883_RS00200	panD	37499..37852 (+)	354	WP_000142286.1	aspartate 1-decarboxylase	-
CS883_RS00205	-	37855..38157 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
CS883_RS00210	-	38157..39161 (+)	1005	WP_089086474.1	PDZ domain-containing protein	-
CS883_RS00215	comB6	39169..40224 (+)	1056	WP_089086475.1	P-type conjugative transfer protein TrbL	Machinery gene
CS883_RS00220	comB7	40240..40353 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
CS883_RS00225	comB8	40350..41093 (+)	744	WP_000660557.1	type IV secretion system protein	Machinery gene
CS883_RS00230	comB9	41093..42079 (+)	987	WP_089086476.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CS883_RS00235	comB10	42072..43208 (+)	1137	WP_089086477.1	DNA type IV secretion system protein ComB10	Machinery gene
CS883_RS00240	-	43278..44690 (+)	1413	WP_089086478.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39677.63 Da
• Isoelectric Point: 8.6737

>NTDB_id=1145837 CS883_RS00215 WP_089086475.1 39169..40224(+) (comB6) [Helicobacter pylori isolate HE134/09]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASVLLEALWFVGFFALFNY
ALKNPSCFYELFQNAIFVAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQVLFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQYTTTSPALSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=1145837 CS883_RS00215 WP_089086475.1 39169..40224(+) (comB6) [Helicobacter pylori isolate HE134/09]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTTTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGCGTGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGTGCTTTTATGAATTGTTTCAAAACGCTATTTTTGTTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATTTTTAATCATGGTTTTTATGCCCTTAGCT
TCATCAGCGATTTGAGCCATAACGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGTGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGATTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTAG
TGGGTTTTTTGAACGTGTCGGTTACTAAGGCGTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTACAATATACCA
CAACCTCGCCCGCTCTTTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	92.593	100	0.926