Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CS888_RS02515 Genome accession   NZ_LT635473
Coordinates   505371..505655 (-) Length   94 a.a.
NCBI ID   WP_000413637.1    Uniprot ID   A0AB72ZV75
Organism   Helicobacter pylori isolate HE136/09     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500371..510655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS888_RS02490 - 501032..502168 (-) 1137 WP_089086746.1 VirB8/TrbF family protein -
  CS888_RS08390 - 502161..502301 (-) 141 WP_000789928.1 hypothetical protein -
  CS888_RS02500 - 502298..504848 (-) 2551 Protein_479 VirB4 family type IV secretion/conjugal transfer ATPase -
  CS888_RS02505 - 504848..505084 (-) 237 WP_001168537.1 hypothetical protein -
  CS888_RS02510 comB3 505096..505359 (-) 264 WP_001177718.1 hypothetical protein Machinery gene
  CS888_RS02515 comB2 505371..505655 (-) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  CS888_RS02520 - 505643..506131 (-) 489 WP_089086747.1 hypothetical protein -
  CS888_RS02525 - 506195..506353 (-) 159 WP_231899360.1 hypothetical protein -
  CS888_RS02530 - 506356..507156 (-) 801 WP_089086748.1 integrase -
  CS888_RS02535 - 507211..507747 (+) 537 Protein_486 DNA adenine methylase -
  CS888_RS02540 - 507750..508373 (+) 624 WP_089086749.1 GIY-YIG nuclease family protein -
  CS888_RS02545 - 508521..508883 (+) 363 Protein_488 DNA cytosine methyltransferase -
  CS888_RS02550 - 509043..509987 (-) 945 WP_089086751.1 catalase family peroxidase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10753.05 Da        Isoelectric Point: 10.7837

>NTDB_id=1145793 CS888_RS02515 WP_000413637.1 505371..505655(-) (comB2) [Helicobacter pylori isolate HE136/09]
MEKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1145793 CS888_RS02515 WP_000413637.1 505371..505655(-) (comB2) [Helicobacter pylori isolate HE136/09]
ATGGAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(6-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment