Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CS888_RS01710 Genome accession   NZ_LT635473
Coordinates   344009..344413 (+) Length   134 a.a.
NCBI ID   WP_089086648.1    Uniprot ID   A0A238GU65
Organism   Helicobacter pylori isolate HE136/09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 339009..349413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS888_RS01675 - 339186..340124 (-) 939 WP_089086644.1 tetraacyldisaccharide 4'-kinase -
  CS888_RS01680 - 340121..340903 (-) 783 WP_089086645.1 NAD+ synthase -
  CS888_RS01690 ilvC 341152..342144 (+) 993 WP_089086646.1 ketol-acid reductoisomerase -
  CS888_RS01695 minD 342169..342975 (+) 807 WP_001019079.1 septum site-determining protein MinD -
  CS888_RS01700 minE 342972..343205 (+) 234 WP_033592300.1 cell division topological specificity factor MinE -
  CS888_RS01705 dprA 343212..344012 (+) 801 WP_089086647.1 DNA-processing protein DprA Machinery gene
  CS888_RS01710 dprB 344009..344413 (+) 405 WP_089086648.1 Holliday junction resolvase RuvX Machinery gene
  CS888_RS01715 - 344702..344940 (+) 239 Protein_326 sel1 repeat family protein -
  CS888_RS01720 - 345138..345476 (+) 339 WP_000699880.1 hypothetical protein -
  CS888_RS01725 - 345460..346020 (+) 561 WP_089086649.1 hypothetical protein -
  CS888_RS01730 - 346122..347003 (-) 882 WP_089086650.1 RluA family pseudouridine synthase -
  CS888_RS01735 recJ 347003..348553 (-) 1551 WP_089086651.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15220.62 Da        Isoelectric Point: 9.1735

>NTDB_id=1145790 CS888_RS01710 WP_089086648.1 344009..344413(+) (dprB) [Helicobacter pylori isolate HE136/09]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYDNLEHLGRKNKRLATKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1145790 CS888_RS01710 WP_089086648.1 344009..344413(+) (dprB) [Helicobacter pylori isolate HE136/09]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAATGTTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAATTCTAGCGTAGAAGCTTATGACAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A238GU65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.182

98.507

0.918

Multiple sequence alignment