Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   BQ6063_RS04795 Genome accession   NZ_LT632615
Coordinates   1029769..1030353 (+) Length   194 a.a.
NCBI ID   WP_011213356.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST23 isolate ST23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1024769..1035353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ6063_RS04775 (EUL28_00929) ravI 1026119..1027126 (-) 1008 WP_011215093.1 Dot/Icm T4SS effector RavI -
  BQ6063_RS04780 (EUL28_00930) pilM 1027543..1028607 (+) 1065 WP_011215094.1 type IV pilus assembly protein PilM Machinery gene
  BQ6063_RS04785 (EUL28_00931) pilN 1028611..1029159 (+) 549 WP_011213354.1 PilN domain-containing protein Machinery gene
  BQ6063_RS04790 (EUL28_00932) pilO 1029173..1029772 (+) 600 WP_011213355.1 type 4a pilus biogenesis protein PilO Machinery gene
  BQ6063_RS04795 (EUL28_00933) pilP 1029769..1030353 (+) 585 WP_011213356.1 pilus assembly protein PilP Machinery gene
  BQ6063_RS04800 (EUL28_00934) pilQ 1030357..1032453 (+) 2097 WP_027220941.1 type IV pilus secretin PilQ Machinery gene
  BQ6063_RS04805 (EUL28_00935) aroK 1032899..1033426 (+) 528 WP_010946667.1 shikimate kinase AroK -
  BQ6063_RS04810 (EUL28_00936) aroB 1033413..1034522 (+) 1110 WP_027220942.1 3-dehydroquinate synthase -

Sequence


Protein


Download         Length: 194 a.a.        Molecular weight: 22206.70 Da        Isoelectric Point: 10.0815

>NTDB_id=1145526 BQ6063_RS04795 WP_011213356.1 1029769..1030353(+) (pilP) [Legionella pneumophila strain ST23 isolate ST23]
MIIKNNQTLILGFFGNSLCTFLTSENFRKSLLTALLVLLLSACSGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDDRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIRQPDGQISRVRVGDYMGQNYGRII
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1145526 BQ6063_RS04795 WP_011213356.1 1029769..1030353(+) (pilP) [Legionella pneumophila strain ST23 isolate ST23]
ATGATAATTAAAAATAACCAGACTCTTATATTAGGCTTTTTCGGAAATTCTCTGTGTACTTTCCTCACCTCAGAGAATTT
CCGAAAAAGCCTATTGACGGCGTTATTGGTTCTATTACTTAGTGCCTGCTCTGGTGATAACAGTGACCTTGTTAAGTACA
TCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTTCCA
GAAAACGATGATAGGCGAAATCCATTCAAACCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAAAAG
GCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCTGGG
CTCTGATTAGGCAACCTGACGGTCAGATTAGCCGTGTTAGGGTTGGAGATTATATGGGACAAAATTATGGACGTATTATT
TTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAATTAA
TTTGGATACTGGCAAGCAGGAGTGA

Domains


Predicted by InterproScan.

(49-188)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

100

100

1


Multiple sequence alignment