Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BQ5903_RS07875 Genome accession   NZ_LT630287
Coordinates   1700379..1702184 (-) Length   601 a.a.
NCBI ID   WP_079579294.1    Uniprot ID   A0A1K1KQ13
Organism   Ligilactobacillus acidipiscis strain ACA-DC 1533     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1695379..1707184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ5903_RS07855 (LAC1533_1562) mgtE 1695872..1697242 (-) 1371 WP_056971694.1 magnesium transporter -
  BQ5903_RS07860 (LAC1533_1563) - 1697256..1698149 (-) 894 WP_010498948.1 RluA family pseudouridine synthase -
  BQ5903_RS07865 (LAC1533_1564) - 1698146..1698955 (-) 810 WP_079579293.1 NAD kinase -
  BQ5903_RS07870 (LAC1533_1565) - 1699654..1700253 (+) 600 WP_231920942.1 DsbA family protein -
  BQ5903_RS07875 (LAC1533_1566) pepF 1700379..1702184 (-) 1806 WP_079579294.1 oligoendopeptidase F Regulator
  BQ5903_RS07880 (LAC1533_1567) - 1702326..1703345 (-) 1020 WP_079579295.1 competence protein CoiA -
  BQ5903_RS07885 (LAC1533_1568) - 1703471..1704220 (-) 750 WP_010498926.1 adaptor protein MecA -
  BQ5903_RS07890 (LAC1533_1569) - 1704479..1705762 (+) 1284 WP_079578369.1 ISL3 family transposase -
  BQ5903_RS07895 (LAC1533_1570) spxA 1705853..1706251 (-) 399 WP_010498925.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68774.24 Da        Isoelectric Point: 4.7970

>NTDB_id=1145453 BQ5903_RS07875 WP_079579294.1 1700379..1702184(-) (pepF) [Ligilactobacillus acidipiscis strain ACA-DC 1533]
MSEVKKVPQRSEVAPELTWNLGLIFATDQDFEDAFKKVNIEAEKFKGYQGTLCDGPAALLAAVKALLDVYRLSEKVYVYA
SMKNDQDTTNSKYQGMFSRVQALMASIEGELAWFDPELMSLGKEKVQEYLQQEPELKEYSHLFEDTLRFAEHTLSAPEEK
LLASMGDIFAVPENIFSVLDDADLKFADVIDQNGDRTELTDSTYSQLIQSTDREIRKQAFTKLYEVYHQFLRTFGKTLGS
HVHIQNYDAKVRHYGSARQAALNANNIPETVYDNLVQTVHRHLDLLQRYVGLRKRVLKLTDLSMYDLYTPLTGKPELTYT
FEEGKKIALKALSVLGSDYVGQVQNAFEKRYIDVIPNKGKRGGAYSGGGYDTPPYILLNWNDDLDSLYTLVHEMGHSMHS
QLTKQHQPFQYGDYSIFVAEIASTTNENLLTAYLLEHEADPAVRAYVLNYYLDGFKGTVYRQTQFAEFEQWLHETDAKGE
SLTADEMSTKYLDLNRQYYGKEVGSTPQIADEWARIPHFYYDFYVYQYSTGFAAATTLANNILDDQPEDTAAYLHYLQSG
SSDYPINIMKQAGVNMTKVDYLENAFTVFEKRLEELKQLLK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1145453 BQ5903_RS07875 WP_079579294.1 1700379..1702184(-) (pepF) [Ligilactobacillus acidipiscis strain ACA-DC 1533]
ATGTCTGAAGTTAAAAAAGTACCACAACGAAGTGAAGTTGCTCCGGAGTTGACCTGGAATCTGGGTTTAATTTTTGCGAC
TGATCAAGATTTTGAAGATGCATTTAAAAAGGTTAATATCGAAGCTGAGAAATTTAAGGGATATCAGGGCACTCTTTGTG
ATGGACCAGCTGCATTATTAGCTGCTGTCAAAGCCTTGTTGGACGTGTACCGTTTATCCGAAAAGGTGTATGTATATGCT
AGTATGAAAAATGATCAGGATACAACGAATTCGAAGTATCAAGGTATGTTTTCTAGGGTTCAGGCACTAATGGCGTCAAT
AGAAGGAGAATTAGCTTGGTTTGACCCAGAACTTATGAGCCTAGGTAAAGAAAAGGTGCAAGAGTATTTACAACAGGAGC
CAGAACTTAAAGAATATTCTCATTTATTTGAGGACACCTTACGTTTTGCTGAACATACTTTAAGCGCGCCGGAAGAAAAA
TTATTAGCTTCGATGGGAGATATTTTTGCTGTTCCGGAAAATATCTTTTCAGTCCTAGATGATGCGGATCTGAAGTTTGC
TGATGTGATCGATCAAAATGGTGATAGAACTGAGCTGACTGATAGTACATACAGCCAACTGATCCAGTCTACAGATCGCG
AGATTAGAAAGCAGGCTTTTACCAAATTATACGAAGTTTACCACCAATTCTTACGAACTTTCGGTAAAACACTTGGGTCT
CATGTTCATATTCAAAACTATGATGCGAAAGTCCGACATTATGGTAGTGCAAGACAAGCAGCATTAAATGCAAATAATAT
TCCAGAAACGGTTTATGATAACTTAGTTCAGACTGTTCATCGCCACCTTGATCTGTTACAACGTTATGTTGGTTTGCGAA
AAAGAGTCTTGAAATTAACTGATTTGAGCATGTATGATCTTTATACGCCATTGACAGGTAAGCCTGAATTGACGTATACA
TTTGAGGAAGGTAAAAAAATTGCTTTAAAGGCATTGTCAGTTTTGGGCTCGGATTATGTTGGACAGGTTCAAAATGCCTT
TGAAAAACGGTATATCGATGTTATTCCTAATAAAGGGAAAAGAGGGGGAGCTTATTCAGGCGGCGGCTATGATACACCAC
CATATATTTTATTGAACTGGAACGATGATCTGGATAGTTTGTATACTTTAGTTCATGAAATGGGACATAGCATGCATAGC
CAACTGACCAAACAGCATCAGCCCTTTCAATATGGTGACTATTCTATTTTTGTGGCTGAGATCGCTTCAACTACAAATGA
AAATTTGCTGACTGCTTACTTATTGGAACACGAAGCTGATCCAGCTGTTAGAGCATATGTTTTAAATTACTATTTGGACG
GCTTTAAGGGTACAGTCTATCGGCAAACACAGTTCGCTGAATTTGAACAGTGGCTCCATGAAACAGATGCAAAAGGAGAA
TCTTTGACAGCTGATGAAATGTCGACTAAATACTTGGACCTTAACCGACAATACTATGGCAAAGAAGTCGGCAGTACCCC
ACAAATCGCTGACGAGTGGGCTAGGATCCCACATTTTTACTATGATTTTTATGTTTACCAATACTCTACAGGTTTTGCTG
CAGCGACAACATTAGCTAATAATATTCTAGATGACCAGCCTGAAGATACTGCAGCCTACCTTCATTACTTGCAATCAGGA
AGTTCAGACTACCCGATCAACATTATGAAACAAGCTGGGGTAAATATGACTAAAGTTGATTATTTAGAAAATGCTTTTAC
TGTCTTTGAGAAGCGACTTGAGGAACTGAAACAATTATTAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1K1KQ13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.858

98.502

0.511

Multiple sequence alignment